miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28875 3' -54.4 NC_006146.1 + 43521 0.66 0.94142
Target:  5'- gGCCaGGCUgCCGgCCACCaucagUGGggUGUc -3'
miRNA:   3'- aUGGaUCGA-GGUgGGUGG-----ACCuuAUA- -5'
28875 3' -54.4 NC_006146.1 + 124736 0.66 0.94142
Target:  5'- -cUCUGGCcCCACCCGaguuCCUGGGGc-- -3'
miRNA:   3'- auGGAUCGaGGUGGGU----GGACCUUaua -5'
28875 3' -54.4 NC_006146.1 + 9468 0.66 0.94142
Target:  5'- cGCCUugGGUUCCcgcggggccacACCCGCCUGGc---- -3'
miRNA:   3'- aUGGA--UCGAGG-----------UGGGUGGACCuuaua -5'
28875 3' -54.4 NC_006146.1 + 59196 0.66 0.93654
Target:  5'- gGCCU-GCUCCAUCCugCaGGGc--- -3'
miRNA:   3'- aUGGAuCGAGGUGGGugGaCCUuaua -5'
28875 3' -54.4 NC_006146.1 + 24070 0.66 0.931408
Target:  5'- gGCCcgGGCUCUacgcuggcgcgGCCuCGCCUGGGAc-- -3'
miRNA:   3'- aUGGa-UCGAGG-----------UGG-GUGGACCUUaua -5'
28875 3' -54.4 NC_006146.1 + 43042 0.66 0.931408
Target:  5'- gUGCCUGGCggaUACgCCGCCUGGc---- -3'
miRNA:   3'- -AUGGAUCGag-GUG-GGUGGACCuuaua -5'
28875 3' -54.4 NC_006146.1 + 120354 0.66 0.926024
Target:  5'- aACCUGcagguGC-CCACCCgggACCUGGAGc-- -3'
miRNA:   3'- aUGGAU-----CGaGGUGGG---UGGACCUUaua -5'
28875 3' -54.4 NC_006146.1 + 112914 0.66 0.920386
Target:  5'- gGCCUccAGCUCguCCUggugcGCCUGGAAg-- -3'
miRNA:   3'- aUGGA--UCGAGguGGG-----UGGACCUUaua -5'
28875 3' -54.4 NC_006146.1 + 100650 0.66 0.920386
Target:  5'- cACCgccauGUUCC-CCgACCUGGggUAc -3'
miRNA:   3'- aUGGau---CGAGGuGGgUGGACCuuAUa -5'
28875 3' -54.4 NC_006146.1 + 165703 0.67 0.914497
Target:  5'- -cCCUAGCUCC-CCCagGCCcagGGAAa-- -3'
miRNA:   3'- auGGAUCGAGGuGGG--UGGa--CCUUaua -5'
28875 3' -54.4 NC_006146.1 + 111366 0.67 0.914497
Target:  5'- cGCCacGCUgCACCCccACCUGGAGg-- -3'
miRNA:   3'- aUGGauCGAgGUGGG--UGGACCUUaua -5'
28875 3' -54.4 NC_006146.1 + 138911 0.67 0.901967
Target:  5'- -uCCUAGCgugUCGCCUGCCUccGGGAUGc -3'
miRNA:   3'- auGGAUCGa--GGUGGGUGGA--CCUUAUa -5'
28875 3' -54.4 NC_006146.1 + 55706 0.67 0.895331
Target:  5'- cGCCggggGGCUCUGCCCGCCgcUGGc---- -3'
miRNA:   3'- aUGGa---UCGAGGUGGGUGG--ACCuuaua -5'
28875 3' -54.4 NC_006146.1 + 107826 0.67 0.895331
Target:  5'- gUACCaAGCcCCGCCuCGCCcaagUGGAGUAa -3'
miRNA:   3'- -AUGGaUCGaGGUGG-GUGG----ACCUUAUa -5'
28875 3' -54.4 NC_006146.1 + 137618 0.67 0.895331
Target:  5'- -cCCUGGgUCCGCUgguucgguuCACCUGGAAg-- -3'
miRNA:   3'- auGGAUCgAGGUGG---------GUGGACCUUaua -5'
28875 3' -54.4 NC_006146.1 + 43446 0.67 0.895331
Target:  5'- aGCCU-GCgggCCGCCaCAUCUGGAGc-- -3'
miRNA:   3'- aUGGAuCGa--GGUGG-GUGGACCUUaua -5'
28875 3' -54.4 NC_006146.1 + 124459 0.67 0.895331
Target:  5'- gGCCUAcGCcgCCGCCUuCCUGGGGg-- -3'
miRNA:   3'- aUGGAU-CGa-GGUGGGuGGACCUUaua -5'
28875 3' -54.4 NC_006146.1 + 127176 0.67 0.886342
Target:  5'- cACCUGGCccgggcggaggaaaUCCGCCaggACCUGGAc--- -3'
miRNA:   3'- aUGGAUCG--------------AGGUGGg--UGGACCUuaua -5'
28875 3' -54.4 NC_006146.1 + 17599 0.68 0.881334
Target:  5'- gACCUGGC-CCggGCCUgguGCCUGGAGc-- -3'
miRNA:   3'- aUGGAUCGaGG--UGGG---UGGACCUUaua -5'
28875 3' -54.4 NC_006146.1 + 124508 0.68 0.853812
Target:  5'- gGCCUGGuCUCgGCCCuggcgagggacggggGCCUGGGGg-- -3'
miRNA:   3'- aUGGAUC-GAGgUGGG---------------UGGACCUUaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.