miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28875 5' -50.1 NC_006146.1 + 6415 0.66 0.998294
Target:  5'- gGGGUcCCUuuggcCCAGGGccAUGuGGGCCCUg -3'
miRNA:   3'- -CCUAuGGA-----GGUCCUauUAC-CUUGGGA- -5'
28875 5' -50.1 NC_006146.1 + 120052 0.66 0.998294
Target:  5'- cGGAgacugguggcgcUGCUgcgCCGGGAaGAcGGAGCCCc -3'
miRNA:   3'- -CCU------------AUGGa--GGUCCUaUUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 42362 0.66 0.998263
Target:  5'- aGGAUcucccgcGCCgCCAGGGUGGgcgaggGGcGCCCc -3'
miRNA:   3'- -CCUA-------UGGaGGUCCUAUUa-----CCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 96177 0.66 0.998231
Target:  5'- uGGGUcCCUCCAGGGccuuucuGGCCCUg -3'
miRNA:   3'- -CCUAuGGAGGUCCUauuacc-UUGGGA- -5'
28875 5' -50.1 NC_006146.1 + 133049 0.66 0.998098
Target:  5'- cGGGUACgucuggcguCUCCAGGGUGguuccggguggggggGUGGu-CCCg -3'
miRNA:   3'- -CCUAUG---------GAGGUCCUAU---------------UACCuuGGGa -5'
28875 5' -50.1 NC_006146.1 + 32346 0.66 0.997957
Target:  5'- aGGGUggcgcACCUCgaggUAGGAUAggGGGgcACCCg -3'
miRNA:   3'- -CCUA-----UGGAG----GUCCUAUuaCCU--UGGGa -5'
28875 5' -50.1 NC_006146.1 + 107963 0.66 0.997957
Target:  5'- cGAgACCUCCAGGGcccUGGAGaCCa -3'
miRNA:   3'- cCUaUGGAGGUCCUauuACCUUgGGa -5'
28875 5' -50.1 NC_006146.1 + 129385 0.66 0.997957
Target:  5'- cGGcgGCCUCCucuGGGgcc-GGAAgCCUg -3'
miRNA:   3'- -CCuaUGGAGGu--CCUauuaCCUUgGGA- -5'
28875 5' -50.1 NC_006146.1 + 141789 0.66 0.997957
Target:  5'- gGGGUcCCUCCGGccGGccUGGUGG-ACCCg -3'
miRNA:   3'- -CCUAuGGAGGUC--CU--AUUACCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 144867 0.66 0.997957
Target:  5'- gGGGUcCCUCCGGccGGccUGGUGG-ACCCg -3'
miRNA:   3'- -CCUAuGGAGGUC--CU--AUUACCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 157179 0.66 0.997957
Target:  5'- gGGGUcCCUCCGGccGGccUGGUGG-ACCCg -3'
miRNA:   3'- -CCUAuGGAGGUC--CU--AUUACCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 154101 0.66 0.997957
Target:  5'- gGGGUcCCUCCGGccGGccUGGUGG-ACCCg -3'
miRNA:   3'- -CCUAuGGAGGUC--CU--AUUACCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 151023 0.66 0.997957
Target:  5'- gGGGUcCCUCCGGccGGccUGGUGG-ACCCg -3'
miRNA:   3'- -CCUAuGGAGGUC--CU--AUUACCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 147945 0.66 0.997957
Target:  5'- gGGGUcCCUCCGGccGGccUGGUGG-ACCCg -3'
miRNA:   3'- -CCUAuGGAGGUC--CU--AUUACCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 100671 0.66 0.997729
Target:  5'- gGGGUACCccugCUAcuucaacgcgcugguGGAcuAUGGGGCCCUg -3'
miRNA:   3'- -CCUAUGGa---GGU---------------CCUauUACCUUGGGA- -5'
28875 5' -50.1 NC_006146.1 + 61525 0.66 0.997566
Target:  5'- gGGAgGCCUCCGGuGuccgggGGAcGCCCUc -3'
miRNA:   3'- -CCUaUGGAGGUC-Cuauua-CCU-UGGGA- -5'
28875 5' -50.1 NC_006146.1 + 11173 0.66 0.997566
Target:  5'- aGGAgcGCCUCUAcGGGg---GGAACCUg -3'
miRNA:   3'- -CCUa-UGGAGGU-CCUauuaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 46157 0.66 0.997566
Target:  5'- uGGAccaGCC-CCAGGAacuccgGGUGGGGCCa- -3'
miRNA:   3'- -CCUa--UGGaGGUCCUa-----UUACCUUGGga -5'
28875 5' -50.1 NC_006146.1 + 90539 0.66 0.997566
Target:  5'- ---aACCUCCcGGAgcgGUGGAgcaggGCCCg -3'
miRNA:   3'- ccuaUGGAGGuCCUau-UACCU-----UGGGa -5'
28875 5' -50.1 NC_006146.1 + 65192 0.66 0.997566
Target:  5'- uGGAgcccuagGCgCUCUGGGGgcccugGGAGCCCg -3'
miRNA:   3'- -CCUa------UG-GAGGUCCUauua--CCUUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.