miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28875 5' -50.1 NC_006146.1 + 32442 1.12 0.008357
Target:  5'- aGGAUACCUCCAGGAUAAUGGAACCCUa -3'
miRNA:   3'- -CCUAUGGAGGUCCUAUUACCUUGGGA- -5'
28875 5' -50.1 NC_006146.1 + 136274 0.98 0.057417
Target:  5'- aGGAUACCUCCAGGAUAAUGaAACCCUa -3'
miRNA:   3'- -CCUAUGGAGGUCCUAUUACcUUGGGA- -5'
28875 5' -50.1 NC_006146.1 + 38457 0.78 0.658588
Target:  5'- --cUGCCUCCGGGGUGAcGGGugCCa -3'
miRNA:   3'- ccuAUGGAGGUCCUAUUaCCUugGGa -5'
28875 5' -50.1 NC_006146.1 + 149796 0.75 0.790058
Target:  5'- ---gGCCUCCAGGGaGAUGGGGgCCa -3'
miRNA:   3'- ccuaUGGAGGUCCUaUUACCUUgGGa -5'
28875 5' -50.1 NC_006146.1 + 75337 0.75 0.808561
Target:  5'- cGGAcGCCUCCGugaggcGGAUAGUgaagaggauaGGGACCCUg -3'
miRNA:   3'- -CCUaUGGAGGU------CCUAUUA----------CCUUGGGA- -5'
28875 5' -50.1 NC_006146.1 + 140385 0.74 0.858117
Target:  5'- aGAgagAUCUCCAGGAUGucagcucuguguUGGGGCCCg -3'
miRNA:   3'- cCUa--UGGAGGUCCUAUu-----------ACCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 167889 0.74 0.859703
Target:  5'- aGGUugCUCCAGGG--AUGGAaagGCCCc -3'
miRNA:   3'- cCUAugGAGGUCCUauUACCU---UGGGa -5'
28875 5' -50.1 NC_006146.1 + 62440 0.73 0.87508
Target:  5'- aGcgGCCUCCGGGcUAGUGG-ACCUUg -3'
miRNA:   3'- cCuaUGGAGGUCCuAUUACCuUGGGA- -5'
28875 5' -50.1 NC_006146.1 + 57761 0.72 0.929168
Target:  5'- cGGAUAgCCUCgGGGGgcGUGGGagauuugaggcagccGCCCUg -3'
miRNA:   3'- -CCUAU-GGAGgUCCUauUACCU---------------UGGGA- -5'
28875 5' -50.1 NC_006146.1 + 47319 0.7 0.962859
Target:  5'- ---gGCCUCCuGGAUGAUGGccUCCa -3'
miRNA:   3'- ccuaUGGAGGuCCUAUUACCuuGGGa -5'
28875 5' -50.1 NC_006146.1 + 18855 0.7 0.964246
Target:  5'- cGGGcGCUgCCGGGGUGGUGGAcgugcgggggccucaGCCCc -3'
miRNA:   3'- -CCUaUGGaGGUCCUAUUACCU---------------UGGGa -5'
28875 5' -50.1 NC_006146.1 + 13421 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 25733 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 22655 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 28811 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 19577 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 16499 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 41175 0.7 0.966257
Target:  5'- cGGAggcgGCCUCguGGAaGAaGGAACUCg -3'
miRNA:   3'- -CCUa---UGGAGguCCUaUUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 11809 0.7 0.966257
Target:  5'- uGGGgacCCUgCAGGAggggaaGGUGGGACCCc -3'
miRNA:   3'- -CCUau-GGAgGUCCUa-----UUACCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 134544 0.7 0.969429
Target:  5'- aGGAU-CgUcCCAGGu--GUGGAACCCa -3'
miRNA:   3'- -CCUAuGgA-GGUCCuauUACCUUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.