miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28875 5' -50.1 NC_006146.1 + 77284 0.66 0.997065
Target:  5'- ---gGCCUCCGGGGaggacagcagccccaGGAGCCCg -3'
miRNA:   3'- ccuaUGGAGGUCCUauua-----------CCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 13874 0.66 0.996594
Target:  5'- --uUGCCUCCagcGGGAUAgaGUGGAcgGCCg- -3'
miRNA:   3'- ccuAUGGAGG---UCCUAU--UACCU--UGGga -5'
28875 5' -50.1 NC_006146.1 + 91744 0.67 0.996
Target:  5'- -aGUGCCUCCGuucuccGGGUucuugGGUGGGugCCUg -3'
miRNA:   3'- ccUAUGGAGGU------CCUA-----UUACCUugGGA- -5'
28875 5' -50.1 NC_006146.1 + 30920 0.67 0.996
Target:  5'- uGGUGgC-CCAGGGg---GGAGCCCg -3'
miRNA:   3'- cCUAUgGaGGUCCUauuaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 51572 0.67 0.995323
Target:  5'- uGGGcGCCgCCGGGA----GGGGCCCg -3'
miRNA:   3'- -CCUaUGGaGGUCCUauuaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 157065 0.67 0.995323
Target:  5'- gGGGUcCCUCCGGccGGccUGAUGG-ACCCg -3'
miRNA:   3'- -CCUAuGGAGGUC--CU--AUUACCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 153987 0.67 0.995323
Target:  5'- gGGGUcCCUCCGGccGGccUGAUGG-ACCCg -3'
miRNA:   3'- -CCUAuGGAGGUC--CU--AUUACCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 88512 0.67 0.995323
Target:  5'- gGGcuGUAUCUCCcuguaacccGGGu--GUGGAGCCCg -3'
miRNA:   3'- -CC--UAUGGAGG---------UCCuauUACCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 141676 0.67 0.995323
Target:  5'- gGGGUcCCUCCGGccGGccUGAUGG-ACCCg -3'
miRNA:   3'- -CCUAuGGAGGUC--CU--AUUACCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 144753 0.67 0.995323
Target:  5'- gGGGUcCCUCCGGccGGccUGAUGG-ACCCg -3'
miRNA:   3'- -CCUAuGGAGGUC--CU--AUUACCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 147831 0.67 0.995323
Target:  5'- gGGGUcCCUCCGGccGGccUGAUGG-ACCCg -3'
miRNA:   3'- -CCUAuGGAGGUC--CU--AUUACCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 150909 0.67 0.995323
Target:  5'- gGGGUcCCUCCGGccGGccUGAUGG-ACCCg -3'
miRNA:   3'- -CCUAuGGAGGUC--CU--AUUACCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 62728 0.67 0.994557
Target:  5'- -uGUACaugcCCAGGAUAGccGGAGCCCc -3'
miRNA:   3'- ccUAUGga--GGUCCUAUUa-CCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 49455 0.67 0.994557
Target:  5'- aGGAUGagaCgagCCAGcgaGAUGAUcGGGGCCCUg -3'
miRNA:   3'- -CCUAUg--Ga--GGUC---CUAUUA-CCUUGGGA- -5'
28875 5' -50.1 NC_006146.1 + 76015 0.67 0.993691
Target:  5'- uGGGUGCCUUUAGGcagGUAccucguGUGGAAUCUc -3'
miRNA:   3'- -CCUAUGGAGGUCC---UAU------UACCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 169744 0.67 0.992718
Target:  5'- gGGGaGCC-CCGGGGcggcccgGGGACCCUc -3'
miRNA:   3'- -CCUaUGGaGGUCCUauua---CCUUGGGA- -5'
28875 5' -50.1 NC_006146.1 + 168812 0.67 0.992718
Target:  5'- gGGGaGCC-CCGGGGcggcccgGGGACCCUc -3'
miRNA:   3'- -CCUaUGGaGGUCCUauua---CCUUGGGA- -5'
28875 5' -50.1 NC_006146.1 + 8960 0.67 0.992718
Target:  5'- gGGAaGCCgggucucCCAGGGUGcuauccaccGUGGAGCCg- -3'
miRNA:   3'- -CCUaUGGa------GGUCCUAU---------UACCUUGGga -5'
28875 5' -50.1 NC_006146.1 + 106906 0.67 0.992718
Target:  5'- gGGAU-CCUCUGGGAc--UGGAAgCCa -3'
miRNA:   3'- -CCUAuGGAGGUCCUauuACCUUgGGa -5'
28875 5' -50.1 NC_006146.1 + 167880 0.67 0.992718
Target:  5'- gGGGaGCC-CCGGGGcggcccgGGGACCCUc -3'
miRNA:   3'- -CCUaUGGaGGUCCUauua---CCUUGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.