miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28875 5' -50.1 NC_006146.1 + 6415 0.66 0.998294
Target:  5'- gGGGUcCCUuuggcCCAGGGccAUGuGGGCCCUg -3'
miRNA:   3'- -CCUAuGGA-----GGUCCUauUAC-CUUGGGA- -5'
28875 5' -50.1 NC_006146.1 + 8960 0.67 0.992718
Target:  5'- gGGAaGCCgggucucCCAGGGUGcuauccaccGUGGAGCCg- -3'
miRNA:   3'- -CCUaUGGa------GGUCCUAU---------UACCUUGGga -5'
28875 5' -50.1 NC_006146.1 + 11173 0.66 0.997566
Target:  5'- aGGAgcGCCUCUAcGGGg---GGAACCUg -3'
miRNA:   3'- -CCUa-UGGAGGU-CCUauuaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 11809 0.7 0.966257
Target:  5'- uGGGgacCCUgCAGGAggggaaGGUGGGACCCc -3'
miRNA:   3'- -CCUau-GGAgGUCCUa-----UUACCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 13421 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 13874 0.66 0.996594
Target:  5'- --uUGCCUCCagcGGGAUAgaGUGGAcgGCCg- -3'
miRNA:   3'- ccuAUGGAGG---UCCUAU--UACCU--UGGga -5'
28875 5' -50.1 NC_006146.1 + 13904 0.68 0.987578
Target:  5'- --cUGCCUCCAGGcaag-GGcGCCCg -3'
miRNA:   3'- ccuAUGGAGGUCCuauuaCCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 16499 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 16981 0.68 0.987578
Target:  5'- --cUGCCUCCAGGcaag-GGcGCCCg -3'
miRNA:   3'- ccuAUGGAGGUCCuauuaCCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 18855 0.7 0.964246
Target:  5'- cGGGcGCUgCCGGGGUGGUGGAcgugcgggggccucaGCCCc -3'
miRNA:   3'- -CCUaUGGaGGUCCUAUUACCU---------------UGGGa -5'
28875 5' -50.1 NC_006146.1 + 19577 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 20059 0.68 0.987578
Target:  5'- --cUGCCUCCAGGcaag-GGcGCCCg -3'
miRNA:   3'- ccuAUGGAGGUCCuauuaCCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 22655 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 23137 0.68 0.987578
Target:  5'- --cUGCCUCCAGGcaag-GGcGCCCg -3'
miRNA:   3'- ccuAUGGAGGUCCuauuaCCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 25733 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 26215 0.68 0.987578
Target:  5'- --cUGCCUCCAGGcaag-GGcGCCCg -3'
miRNA:   3'- ccuAUGGAGGUCCuauuaCCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 28811 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 29293 0.68 0.987578
Target:  5'- --cUGCCUCCAGGcaag-GGcGCCCg -3'
miRNA:   3'- ccuAUGGAGGUCCuauuaCCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 30920 0.67 0.996
Target:  5'- uGGUGgC-CCAGGGg---GGAGCCCg -3'
miRNA:   3'- cCUAUgGaGGUCCUauuaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 32346 0.66 0.997957
Target:  5'- aGGGUggcgcACCUCgaggUAGGAUAggGGGgcACCCg -3'
miRNA:   3'- -CCUA-----UGGAG----GUCCUAUuaCCU--UGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.