miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28875 5' -50.1 NC_006146.1 + 38457 0.78 0.658588
Target:  5'- --cUGCCUCCGGGGUGAcGGGugCCa -3'
miRNA:   3'- ccuAUGGAGGUCCUAUUaCCUugGGa -5'
28875 5' -50.1 NC_006146.1 + 152779 0.68 0.98694
Target:  5'- aGAUGcCCUCCAGGucgaagacguUGGAgGCCCg -3'
miRNA:   3'- cCUAU-GGAGGUCCuauu------ACCU-UGGGa -5'
28875 5' -50.1 NC_006146.1 + 16981 0.68 0.987578
Target:  5'- --cUGCCUCCAGGcaag-GGcGCCCg -3'
miRNA:   3'- ccuAUGGAGGUCCuauuaCCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 120052 0.66 0.998294
Target:  5'- cGGAgacugguggcgcUGCUgcgCCGGGAaGAcGGAGCCCc -3'
miRNA:   3'- -CCU------------AUGGa--GGUCCUaUUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 13421 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 16499 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 22655 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 25733 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 134544 0.7 0.969429
Target:  5'- aGGAU-CgUcCCAGGu--GUGGAACCCa -3'
miRNA:   3'- -CCUAuGgA-GGUCCuauUACCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 116940 0.68 0.985935
Target:  5'- uGGAauagGCCUCCuuGGUGAUGGcauuguuGCCCa -3'
miRNA:   3'- -CCUa---UGGAGGucCUAUUACCu------UGGGa -5'
28875 5' -50.1 NC_006146.1 + 81716 0.69 0.975124
Target:  5'- aGGA-GCC-CCAGGAUAcaacugauGUGGAaucacaGCCCUu -3'
miRNA:   3'- -CCUaUGGaGGUCCUAU--------UACCU------UGGGA- -5'
28875 5' -50.1 NC_006146.1 + 41175 0.7 0.966257
Target:  5'- cGGAggcgGCCUCguGGAaGAaGGAACUCg -3'
miRNA:   3'- -CCUa---UGGAGguCCUaUUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 149796 0.75 0.790058
Target:  5'- ---gGCCUCCAGGGaGAUGGGGgCCa -3'
miRNA:   3'- ccuaUGGAGGUCCUaUUACCUUgGGa -5'
28875 5' -50.1 NC_006146.1 + 49584 0.69 0.982157
Target:  5'- cGAUGuCCUCCAGGAUGAcgcGGAGgCgCUu -3'
miRNA:   3'- cCUAU-GGAGGUCCUAUUa--CCUUgG-GA- -5'
28875 5' -50.1 NC_006146.1 + 140385 0.74 0.858117
Target:  5'- aGAgagAUCUCCAGGAUGucagcucuguguUGGGGCCCg -3'
miRNA:   3'- cCUa--UGGAGGUCCUAUu-----------ACCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 28811 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5'
28875 5' -50.1 NC_006146.1 + 126356 0.69 0.983942
Target:  5'- cGGAgccccgGCCccuuuUCCAGGAUAuccugccAUGGAuCCCa -3'
miRNA:   3'- -CCUa-----UGG-----AGGUCCUAU-------UACCUuGGGa -5'
28875 5' -50.1 NC_006146.1 + 13904 0.68 0.987578
Target:  5'- --cUGCCUCCAGGcaag-GGcGCCCg -3'
miRNA:   3'- ccuAUGGAGGUCCuauuaCCuUGGGa -5'
28875 5' -50.1 NC_006146.1 + 47319 0.7 0.962859
Target:  5'- ---gGCCUCCuGGAUGAUGGccUCCa -3'
miRNA:   3'- ccuaUGGAGGuCCUAUUACCuuGGGa -5'
28875 5' -50.1 NC_006146.1 + 19577 0.7 0.965927
Target:  5'- aGGGUGCCUCCccGGGUcccaggccagccgGA-GGGACCCc -3'
miRNA:   3'- -CCUAUGGAGGu-CCUA-------------UUaCCUUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.