Results 81 - 87 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28876 | 3' | -61.1 | NC_006146.1 | + | 129631 | 0.66 | 0.707647 |
Target: 5'- --cGGGUCCuccgcggGCGCgugcUCCGCCC--GGGa -3' miRNA: 3'- agaCCCAGG-------UGCGa---AGGCGGGgaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 22598 | 0.66 | 0.755315 |
Target: 5'- gUCUGGcucUCCGCGCUcCUGCUggagcuccuguUCUGGGu -3' miRNA: 3'- -AGACCc--AGGUGCGAaGGCGG-----------GGACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 99018 | 0.66 | 0.7086 |
Target: 5'- --aGGGUCCGCGUgacggCCGuguagaggccCCCCaGGGc -3' miRNA: 3'- agaCCCAGGUGCGaa---GGC----------GGGGaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 121150 | 0.66 | 0.7086 |
Target: 5'- gUCUGGG-CCugGgCcgCgCGCCCCUGa- -3' miRNA: 3'- -AGACCCaGGugC-GaaG-GCGGGGACcc -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 125608 | 0.66 | 0.7086 |
Target: 5'- cUCUGGGUCUugGuCUggcggGCCUCaGGGg -3' miRNA: 3'- -AGACCCAGGugC-GAagg--CGGGGaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 161881 | 0.66 | 0.7086 |
Target: 5'- cCUGGGagacCCG-GCUUCCcuuuugggcaacGCCCCgUGGGa -3' miRNA: 3'- aGACCCa---GGUgCGAAGG------------CGGGG-ACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 47250 | 0.66 | 0.746137 |
Target: 5'- --cGGGUCgACGUg---GCCCCUGGc -3' miRNA: 3'- agaCCCAGgUGCGaaggCGGGGACCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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