miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28877 3' -57.5 NC_006146.1 + 91938 0.66 0.889965
Target:  5'- aUGGCUuuCUACuGGCaGGCcugccccuuuuaggaGCCugGGGa -3'
miRNA:   3'- -ACCGGu-GAUGuCCGaCUG---------------UGGugCCC- -5'
28877 3' -57.5 NC_006146.1 + 167157 0.66 0.887294
Target:  5'- gGGacCCACccCGGGCUGAaggGCCACGcGGc -3'
miRNA:   3'- aCC--GGUGauGUCCGACUg--UGGUGC-CC- -5'
28877 3' -57.5 NC_006146.1 + 67969 0.66 0.887294
Target:  5'- gGGCgACUACcuGCUGACGCa--GGa -3'
miRNA:   3'- aCCGgUGAUGucCGACUGUGgugCCc -5'
28877 3' -57.5 NC_006146.1 + 39853 0.66 0.887294
Target:  5'- gGGCCGgcGgGGGCUGuguGCC-CGGGg -3'
miRNA:   3'- aCCGGUgaUgUCCGACug-UGGuGCCC- -5'
28877 3' -57.5 NC_006146.1 + 51900 0.66 0.887294
Target:  5'- aGGCUGCgucgGCggGGGCcuccgaGGCACCgACGGGc -3'
miRNA:   3'- aCCGGUGa---UG--UCCGa-----CUGUGG-UGCCC- -5'
28877 3' -57.5 NC_006146.1 + 67225 0.66 0.887294
Target:  5'- cUGGCCGgc-CAGGCacagGAaGCCACGGa -3'
miRNA:   3'- -ACCGGUgauGUCCGa---CUgUGGUGCCc -5'
28877 3' -57.5 NC_006146.1 + 34022 0.66 0.887294
Target:  5'- gGGUCGggGCAGGCgGGCGugguCC-CGGGg -3'
miRNA:   3'- aCCGGUgaUGUCCGaCUGU----GGuGCCC- -5'
28877 3' -57.5 NC_006146.1 + 39310 0.66 0.88662
Target:  5'- aGGCCugUguacuggGCucGGCUGGCcuCCcCGGGa -3'
miRNA:   3'- aCCGGugA-------UGu-CCGACUGu-GGuGCCC- -5'
28877 3' -57.5 NC_006146.1 + 93456 0.66 0.880463
Target:  5'- aUGGCCAgCUugGaGCUGAUGCCAuagucuCGGa -3'
miRNA:   3'- -ACCGGU-GAugUcCGACUGUGGU------GCCc -5'
28877 3' -57.5 NC_006146.1 + 161753 0.66 0.880463
Target:  5'- gUGGCgGCUG-AGGUccgagggGGCGCCuggGCGGGg -3'
miRNA:   3'- -ACCGgUGAUgUCCGa------CUGUGG---UGCCC- -5'
28877 3' -57.5 NC_006146.1 + 114729 0.66 0.880463
Target:  5'- cGGCCGagUAUcGGCgcauccucaagGACgGCCGCGGGg -3'
miRNA:   3'- aCCGGUg-AUGuCCGa----------CUG-UGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 51189 0.66 0.879769
Target:  5'- gGGU--CUGCGGGCUGGCGugguacagggcauCCACGaGGc -3'
miRNA:   3'- aCCGguGAUGUCCGACUGU-------------GGUGC-CC- -5'
28877 3' -57.5 NC_006146.1 + 31435 0.66 0.87342
Target:  5'- gUGGagaccuucuCCAgUGCAGGCacccccccgGGCACCGUGGGg -3'
miRNA:   3'- -ACC---------GGUgAUGUCCGa--------CUGUGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 117914 0.66 0.87342
Target:  5'- cGGCCACggccgGCAGGUccgccUGcGCACUACcGGc -3'
miRNA:   3'- aCCGGUGa----UGUCCG-----AC-UGUGGUGcCC- -5'
28877 3' -57.5 NC_006146.1 + 28424 0.66 0.87342
Target:  5'- aGGCgGCUcCGGGUc-ACuCCACGGGa -3'
miRNA:   3'- aCCGgUGAuGUCCGacUGuGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 123576 0.66 0.87342
Target:  5'- cUGGCCcgGCUGgAGGCcaucauccagGAgGCC-CGGGa -3'
miRNA:   3'- -ACCGG--UGAUgUCCGa---------CUgUGGuGCCC- -5'
28877 3' -57.5 NC_006146.1 + 6432 0.66 0.87342
Target:  5'- gGGCCAUgu-GGGCccugGGguCCAUGGGg -3'
miRNA:   3'- aCCGGUGaugUCCGa---CUguGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 16190 0.66 0.87342
Target:  5'- cUGGCCGCccugGUGGGCUG-CAUCugGGc -3'
miRNA:   3'- -ACCGGUGa---UGUCCGACuGUGGugCCc -5'
28877 3' -57.5 NC_006146.1 + 41065 0.66 0.87342
Target:  5'- gGGCuCGCUcggacGgGGGCgUGGCggguggGCCGCGGGc -3'
miRNA:   3'- aCCG-GUGA-----UgUCCG-ACUG------UGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 102477 0.66 0.872704
Target:  5'- cGGCCGCggcguuCAGGgucucgcggaUGacagagucaggcaGCACCACGGGa -3'
miRNA:   3'- aCCGGUGau----GUCCg---------AC-------------UGUGGUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.