miRNA display CGI


Results 1 - 20 of 157 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28877 3' -57.5 NC_006146.1 + 91938 0.66 0.889965
Target:  5'- aUGGCUuuCUACuGGCaGGCcugccccuuuuaggaGCCugGGGa -3'
miRNA:   3'- -ACCGGu-GAUGuCCGaCUG---------------UGGugCCC- -5'
28877 3' -57.5 NC_006146.1 + 123935 0.66 0.866169
Target:  5'- cUGGCgGCggcCGGGCcGGCGaaauaCGCGGGc -3'
miRNA:   3'- -ACCGgUGau-GUCCGaCUGUg----GUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 111012 0.66 0.866169
Target:  5'- uUGGCCA--GCGuGCUGGC-CCGCGcGGc -3'
miRNA:   3'- -ACCGGUgaUGUcCGACUGuGGUGC-CC- -5'
28877 3' -57.5 NC_006146.1 + 59575 0.66 0.866169
Target:  5'- gGGCCACggcGCAGG-UGGCgAUCugGaGGg -3'
miRNA:   3'- aCCGGUGa--UGUCCgACUG-UGGugC-CC- -5'
28877 3' -57.5 NC_006146.1 + 95539 0.66 0.863211
Target:  5'- gGGCCcaGCUugGGGCagcguaugacaugGACACCuggACGGa -3'
miRNA:   3'- aCCGG--UGAugUCCGa------------CUGUGG---UGCCc -5'
28877 3' -57.5 NC_006146.1 + 111992 0.66 0.858714
Target:  5'- aUGGCCucgccCUGCAGGUc-GCGCCAaaagUGGGc -3'
miRNA:   3'- -ACCGGu----GAUGUCCGacUGUGGU----GCCC- -5'
28877 3' -57.5 NC_006146.1 + 92211 0.66 0.851062
Target:  5'- gGGCC-CgGCcugGGGCUG-CugCugGGGg -3'
miRNA:   3'- aCCGGuGaUG---UCCGACuGugGugCCC- -5'
28877 3' -57.5 NC_006146.1 + 92062 0.66 0.851062
Target:  5'- gGGCC-CgGCcugGGGCUG-CugCugGGGg -3'
miRNA:   3'- aCCGGuGaUG---UCCGACuGugGugCCC- -5'
28877 3' -57.5 NC_006146.1 + 71585 0.66 0.851062
Target:  5'- cGGCUuccGCaGCAGGuCUGGCccugACCagGCGGGa -3'
miRNA:   3'- aCCGG---UGaUGUCC-GACUG----UGG--UGCCC- -5'
28877 3' -57.5 NC_006146.1 + 81776 0.66 0.871986
Target:  5'- aUGGCCGCccggucuccgGGGgUGcCACCugGGGc -3'
miRNA:   3'- -ACCGGUGaug-------UCCgACuGUGGugCCC- -5'
28877 3' -57.5 NC_006146.1 + 28424 0.66 0.87342
Target:  5'- aGGCgGCUcCGGGUc-ACuCCACGGGa -3'
miRNA:   3'- aCCGgUGAuGUCCGacUGuGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 123576 0.66 0.87342
Target:  5'- cUGGCCcgGCUGgAGGCcaucauccagGAgGCC-CGGGa -3'
miRNA:   3'- -ACCGG--UGAUgUCCGa---------CUgUGGuGCCC- -5'
28877 3' -57.5 NC_006146.1 + 167157 0.66 0.887294
Target:  5'- gGGacCCACccCGGGCUGAaggGCCACGcGGc -3'
miRNA:   3'- aCC--GGUGauGUCCGACUg--UGGUGC-CC- -5'
28877 3' -57.5 NC_006146.1 + 67969 0.66 0.887294
Target:  5'- gGGCgACUACcuGCUGACGCa--GGa -3'
miRNA:   3'- aCCGgUGAUGucCGACUGUGgugCCc -5'
28877 3' -57.5 NC_006146.1 + 39853 0.66 0.887294
Target:  5'- gGGCCGgcGgGGGCUGuguGCC-CGGGg -3'
miRNA:   3'- aCCGGUgaUgUCCGACug-UGGuGCCC- -5'
28877 3' -57.5 NC_006146.1 + 114729 0.66 0.880463
Target:  5'- cGGCCGagUAUcGGCgcauccucaagGACgGCCGCGGGg -3'
miRNA:   3'- aCCGGUg-AUGuCCGa----------CUG-UGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 161753 0.66 0.880463
Target:  5'- gUGGCgGCUG-AGGUccgagggGGCGCCuggGCGGGg -3'
miRNA:   3'- -ACCGgUGAUgUCCGa------CUGUGG---UGCCC- -5'
28877 3' -57.5 NC_006146.1 + 51189 0.66 0.879769
Target:  5'- gGGU--CUGCGGGCUGGCGugguacagggcauCCACGaGGc -3'
miRNA:   3'- aCCGguGAUGUCCGACUGU-------------GGUGC-CC- -5'
28877 3' -57.5 NC_006146.1 + 16190 0.66 0.87342
Target:  5'- cUGGCCGCccugGUGGGCUG-CAUCugGGc -3'
miRNA:   3'- -ACCGGUGa---UGUCCGACuGUGGugCCc -5'
28877 3' -57.5 NC_006146.1 + 6432 0.66 0.87342
Target:  5'- gGGCCAUgu-GGGCccugGGguCCAUGGGg -3'
miRNA:   3'- aCCGGUGaugUCCGa---CUguGGUGCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.