miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28877 3' -57.5 NC_006146.1 + 31592 1.11 0.001744
Target:  5'- uUGGCCACUACAGGCUGACACCACGGGg -3'
miRNA:   3'- -ACCGGUGAUGUCCGACUGUGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 101839 0.8 0.19266
Target:  5'- gGGCCcgagcGCU-CGGGCUGccGCACCACGGGu -3'
miRNA:   3'- aCCGG-----UGAuGUCCGAC--UGUGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 161417 0.78 0.275608
Target:  5'- aGGCCugUGcCAGGCgggugUGGCcCCGCGGGa -3'
miRNA:   3'- aCCGGugAU-GUCCG-----ACUGuGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 64270 0.77 0.288608
Target:  5'- cGGCCGCaGCAGGCgcugcGGCaAUCGCGGGu -3'
miRNA:   3'- aCCGGUGaUGUCCGa----CUG-UGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 15761 0.76 0.33048
Target:  5'- cUGGcCCGCUGCu-GC-GACGCCGCGGGg -3'
miRNA:   3'- -ACC-GGUGAUGucCGaCUGUGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 41576 0.75 0.392989
Target:  5'- cGGCCGCcUACuGGCUGGCcgaggcggagagGCC-CGGGg -3'
miRNA:   3'- aCCGGUG-AUGuCCGACUG------------UGGuGCCC- -5'
28877 3' -57.5 NC_006146.1 + 147454 0.75 0.392989
Target:  5'- gGGCgGCUGgggguCGGGCUGGCcuGCCAgGGGg -3'
miRNA:   3'- aCCGgUGAU-----GUCCGACUG--UGGUgCCC- -5'
28877 3' -57.5 NC_006146.1 + 144376 0.75 0.392989
Target:  5'- gGGCgGCUGgggguCGGGCUGGCcuGCCAgGGGg -3'
miRNA:   3'- aCCGgUGAU-----GUCCGACUG--UGGUgCCC- -5'
28877 3' -57.5 NC_006146.1 + 156687 0.75 0.392989
Target:  5'- gGGCgGCUGgggguCGGGCUGGCcuGCCAgGGGg -3'
miRNA:   3'- aCCGgUGAU-----GUCCGACUG--UGGUgCCC- -5'
28877 3' -57.5 NC_006146.1 + 150532 0.75 0.392989
Target:  5'- gGGCgGCUGgggguCGGGCUGGCcuGCCAgGGGg -3'
miRNA:   3'- aCCGgUGAU-----GUCCGACUG--UGGUgCCC- -5'
28877 3' -57.5 NC_006146.1 + 153610 0.75 0.392989
Target:  5'- gGGCgGCUGgggguCGGGCUGGCcuGCCAgGGGg -3'
miRNA:   3'- aCCGgUGAU-----GUCCGACUG--UGGUgCCC- -5'
28877 3' -57.5 NC_006146.1 + 141298 0.75 0.392989
Target:  5'- gGGCgGCUGgggguCGGGCUGGCcuGCCAgGGGg -3'
miRNA:   3'- aCCGgUGAU-----GUCCGACUG--UGGUgCCC- -5'
28877 3' -57.5 NC_006146.1 + 120549 0.75 0.401325
Target:  5'- cUGGCCAagaucccCAGGCUGGCcgagGCCGCGGa -3'
miRNA:   3'- -ACCGGUgau----GUCCGACUG----UGGUGCCc -5'
28877 3' -57.5 NC_006146.1 + 59402 0.74 0.41833
Target:  5'- gGGCCACUGCAGGCUGGaugucuuguCCuuGGu -3'
miRNA:   3'- aCCGGUGAUGUCCGACUgu-------GGugCCc -5'
28877 3' -57.5 NC_006146.1 + 75823 0.74 0.41833
Target:  5'- aGGCC-CUGCGGGacaUG-CACCAgGGGa -3'
miRNA:   3'- aCCGGuGAUGUCCg--ACuGUGGUgCCC- -5'
28877 3' -57.5 NC_006146.1 + 40742 0.74 0.426995
Target:  5'- gGGCCcguGCUugGGGCUG--GCCACGGa -3'
miRNA:   3'- aCCGG---UGAugUCCGACugUGGUGCCc -5'
28877 3' -57.5 NC_006146.1 + 52974 0.74 0.453613
Target:  5'- aGGCCGgUagugcGCAGGCgGACcugccggccgugGCCGCGGGg -3'
miRNA:   3'- aCCGGUgA-----UGUCCGaCUG------------UGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 132782 0.74 0.45723
Target:  5'- cGGUCGCUGCAGGCUcGCAgCUgcucagcagcugcagGCGGGg -3'
miRNA:   3'- aCCGGUGAUGUCCGAcUGU-GG---------------UGCCC- -5'
28877 3' -57.5 NC_006146.1 + 42716 0.74 0.462685
Target:  5'- cGcCCGCU-CGGGCUGGCAgCCGCGGa -3'
miRNA:   3'- aCcGGUGAuGUCCGACUGU-GGUGCCc -5'
28877 3' -57.5 NC_006146.1 + 139066 0.73 0.49988
Target:  5'- cGGCCACcaUACGGGCccuggUGGCGCgGgGGGc -3'
miRNA:   3'- aCCGGUG--AUGUCCG-----ACUGUGgUgCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.