miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28877 3' -57.5 NC_006146.1 + 81776 0.66 0.871986
Target:  5'- aUGGCCGCccggucuccgGGGgUGcCACCugGGGc -3'
miRNA:   3'- -ACCGGUGaug-------UCCgACuGUGGugCCC- -5'
28877 3' -57.5 NC_006146.1 + 33259 0.66 0.871266
Target:  5'- gGGCCGCUGCcccgcuccggguggGGGgUGGC-CCGgcUGGGc -3'
miRNA:   3'- aCCGGUGAUG--------------UCCgACUGuGGU--GCCC- -5'
28877 3' -57.5 NC_006146.1 + 33135 0.66 0.871266
Target:  5'- gGGCCGCUGCcccgcuccggguggGGGgUGGC-CCGgcUGGGc -3'
miRNA:   3'- aCCGGUGAUG--------------UCCgACUGuGGU--GCCC- -5'
28877 3' -57.5 NC_006146.1 + 38053 0.66 0.866169
Target:  5'- gUGGgagcCCAgaGuCAGGCUGugGCCAaagGGGg -3'
miRNA:   3'- -ACC----GGUgaU-GUCCGACugUGGUg--CCC- -5'
28877 3' -57.5 NC_006146.1 + 45801 0.66 0.866169
Target:  5'- cGGCCGaggaAGGCcGcCGCCACGGc -3'
miRNA:   3'- aCCGGUgaugUCCGaCuGUGGUGCCc -5'
28877 3' -57.5 NC_006146.1 + 54782 0.66 0.866169
Target:  5'- gGGCCGC--CAGGgaGcGCGCCuuGGGc -3'
miRNA:   3'- aCCGGUGauGUCCgaC-UGUGGugCCC- -5'
28877 3' -57.5 NC_006146.1 + 123935 0.66 0.866169
Target:  5'- cUGGCgGCggcCGGGCcGGCGaaauaCGCGGGc -3'
miRNA:   3'- -ACCGgUGau-GUCCGaCUGUg----GUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 111012 0.66 0.866169
Target:  5'- uUGGCCA--GCGuGCUGGC-CCGCGcGGc -3'
miRNA:   3'- -ACCGGUgaUGUcCGACUGuGGUGC-CC- -5'
28877 3' -57.5 NC_006146.1 + 132973 0.66 0.866169
Target:  5'- gGGUC-CUcgGgGGGCggugGAgACCGCGGGu -3'
miRNA:   3'- aCCGGuGA--UgUCCGa---CUgUGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 59575 0.66 0.866169
Target:  5'- gGGCCACggcGCAGG-UGGCgAUCugGaGGg -3'
miRNA:   3'- aCCGGUGa--UGUCCgACUG-UGGugC-CC- -5'
28877 3' -57.5 NC_006146.1 + 95539 0.66 0.863211
Target:  5'- gGGCCcaGCUugGGGCagcguaugacaugGACACCuggACGGa -3'
miRNA:   3'- aCCGG--UGAugUCCGa------------CUGUGG---UGCCc -5'
28877 3' -57.5 NC_006146.1 + 45104 0.66 0.858714
Target:  5'- cGGCCAUUcuccgGCucGGCcgGugACCGcCGGGa -3'
miRNA:   3'- aCCGGUGA-----UGu-CCGa-CugUGGU-GCCC- -5'
28877 3' -57.5 NC_006146.1 + 55368 0.66 0.858714
Target:  5'- -cGCCACcGCGcGCggGACGCC-CGGGg -3'
miRNA:   3'- acCGGUGaUGUcCGa-CUGUGGuGCCC- -5'
28877 3' -57.5 NC_006146.1 + 111992 0.66 0.858714
Target:  5'- aUGGCCucgccCUGCAGGUc-GCGCCAaaagUGGGc -3'
miRNA:   3'- -ACCGGu----GAUGUCCGacUGUGGU----GCCC- -5'
28877 3' -57.5 NC_006146.1 + 92211 0.66 0.851062
Target:  5'- gGGCC-CgGCcugGGGCUG-CugCugGGGg -3'
miRNA:   3'- aCCGGuGaUG---UCCGACuGugGugCCC- -5'
28877 3' -57.5 NC_006146.1 + 71585 0.66 0.851062
Target:  5'- cGGCUuccGCaGCAGGuCUGGCccugACCagGCGGGa -3'
miRNA:   3'- aCCGG---UGaUGUCC-GACUG----UGG--UGCCC- -5'
28877 3' -57.5 NC_006146.1 + 92062 0.66 0.851062
Target:  5'- gGGCC-CgGCcugGGGCUG-CugCugGGGg -3'
miRNA:   3'- aCCGGuGaUG---UCCGACuGugGugCCC- -5'
28877 3' -57.5 NC_006146.1 + 103691 0.67 0.843218
Target:  5'- cUGGCCGgc-CAGGC-GACcgGCCACGGc -3'
miRNA:   3'- -ACCGGUgauGUCCGaCUG--UGGUGCCc -5'
28877 3' -57.5 NC_006146.1 + 114820 0.67 0.843218
Target:  5'- gUGGCCGacacCUACuuGGCccgguggGACGCCuucccGCGGGa -3'
miRNA:   3'- -ACCGGU----GAUGu-CCGa------CUGUGG-----UGCCC- -5'
28877 3' -57.5 NC_006146.1 + 19734 0.67 0.843218
Target:  5'- cGGCCGCUACcGccgcauccuGCUGACGCU--GGGc -3'
miRNA:   3'- aCCGGUGAUGuC---------CGACUGUGGugCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.