miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28877 3' -57.5 NC_006146.1 + 4367 0.72 0.577764
Target:  5'- gUGGCCACggccccGCGGGCUccccaggccGACGCCAUGa- -3'
miRNA:   3'- -ACCGGUGa-----UGUCCGA---------CUGUGGUGCcc -5'
28877 3' -57.5 NC_006146.1 + 5639 0.73 0.518969
Target:  5'- aUGGCCAUggcgggggACAGGggGACgagcaccaGCCGCGGGu -3'
miRNA:   3'- -ACCGGUGa-------UGUCCgaCUG--------UGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 6432 0.66 0.87342
Target:  5'- gGGCCAUgu-GGGCccugGGguCCAUGGGg -3'
miRNA:   3'- aCCGGUGaugUCCGa---CUguGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 10918 0.68 0.774424
Target:  5'- aGGCCagaccccaACUGCGGGCUccugcGCGCCACcuccuaccacaGGGa -3'
miRNA:   3'- aCCGG--------UGAUGUCCGAc----UGUGGUG-----------CCC- -5'
28877 3' -57.5 NC_006146.1 + 11849 0.72 0.542245
Target:  5'- gGGCCcugcuucucggGCUugGGGCgggcccgacguugacUGGCACCaACGGGg -3'
miRNA:   3'- aCCGG-----------UGAugUCCG---------------ACUGUGG-UGCCC- -5'
28877 3' -57.5 NC_006146.1 + 12670 0.68 0.792523
Target:  5'- gGGCCACUAcCAGacGCUGuGCACCAacuucaGGa -3'
miRNA:   3'- aCCGGUGAU-GUC--CGAC-UGUGGUg-----CCc -5'
28877 3' -57.5 NC_006146.1 + 14830 0.69 0.707671
Target:  5'- aGGgCACggucuCGGGCccGGgGCCGCGGGa -3'
miRNA:   3'- aCCgGUGau---GUCCGa-CUgUGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 15761 0.76 0.33048
Target:  5'- cUGGcCCGCUGCu-GC-GACGCCGCGGGg -3'
miRNA:   3'- -ACC-GGUGAUGucCGaCUGUGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 16190 0.66 0.87342
Target:  5'- cUGGCCGCccugGUGGGCUG-CAUCugGGc -3'
miRNA:   3'- -ACCGGUGa---UGUCCGACuGUGGugCCc -5'
28877 3' -57.5 NC_006146.1 + 17688 0.68 0.780818
Target:  5'- cGGCauCUACGGGCgGcccguggcggccaaGCGCCugGGGg -3'
miRNA:   3'- aCCGguGAUGUCCGaC--------------UGUGGugCCC- -5'
28877 3' -57.5 NC_006146.1 + 19393 0.69 0.717462
Target:  5'- gUGGCCACgu--GGCUgcagGACAagCACGGGu -3'
miRNA:   3'- -ACCGGUGauguCCGA----CUGUg-GUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 19734 0.67 0.843218
Target:  5'- cGGCCGCUACcGccgcauccuGCUGACGCU--GGGc -3'
miRNA:   3'- aCCGGUGAUGuC---------CGACUGUGGugCCC- -5'
28877 3' -57.5 NC_006146.1 + 20926 0.68 0.765186
Target:  5'- cGGCCGacCUGCAGGCccUGGCccccacucccacGCCugGGc -3'
miRNA:   3'- aCCGGU--GAUGUCCG--ACUG------------UGGugCCc -5'
28877 3' -57.5 NC_006146.1 + 23481 0.68 0.801368
Target:  5'- gUGGCCAggUACGGGCUGGugggcuCGCUcUGGGa -3'
miRNA:   3'- -ACCGGUg-AUGUCCGACU------GUGGuGCCC- -5'
28877 3' -57.5 NC_006146.1 + 28424 0.66 0.87342
Target:  5'- aGGCgGCUcCGGGUc-ACuCCACGGGa -3'
miRNA:   3'- aCCGgUGAuGUCCGacUGuGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 30212 0.72 0.537366
Target:  5'- gGGCCGCUGCgcccgccGGGCUGGCcggauACCcCGGa -3'
miRNA:   3'- aCCGGUGAUG-------UCCGACUG-----UGGuGCCc -5'
28877 3' -57.5 NC_006146.1 + 31435 0.66 0.87342
Target:  5'- gUGGagaccuucuCCAgUGCAGGCacccccccgGGCACCGUGGGg -3'
miRNA:   3'- -ACC---------GGUgAUGUCCGa--------CUGUGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 31592 1.11 0.001744
Target:  5'- uUGGCCACUACAGGCUGACACCACGGGg -3'
miRNA:   3'- -ACCGGUGAUGUCCGACUGUGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 33135 0.66 0.871266
Target:  5'- gGGCCGCUGCcccgcuccggguggGGGgUGGC-CCGgcUGGGc -3'
miRNA:   3'- aCCGGUGAUG--------------UCCgACUGuGGU--GCCC- -5'
28877 3' -57.5 NC_006146.1 + 33259 0.66 0.871266
Target:  5'- gGGCCGCUGCcccgcuccggguggGGGgUGGC-CCGgcUGGGc -3'
miRNA:   3'- aCCGGUGAUG--------------UCCgACUGuGGU--GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.