miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28877 3' -57.5 NC_006146.1 + 64270 0.77 0.288608
Target:  5'- cGGCCGCaGCAGGCgcugcGGCaAUCGCGGGu -3'
miRNA:   3'- aCCGGUGaUGUCCGa----CUG-UGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 46716 0.7 0.655955
Target:  5'- cGGCCGCggcggcuccgagGCGGGCgGAgGCCACGcuGGc -3'
miRNA:   3'- aCCGGUGa-----------UGUCCGaCUgUGGUGC--CC- -5'
28877 3' -57.5 NC_006146.1 + 44743 0.7 0.657961
Target:  5'- gUGGCCGCggGC-GGCUGugGuuGuCGGGg -3'
miRNA:   3'- -ACCGGUGa-UGuCCGACugUggU-GCCC- -5'
28877 3' -57.5 NC_006146.1 + 67225 0.66 0.887294
Target:  5'- cUGGCCGgc-CAGGCacagGAaGCCACGGa -3'
miRNA:   3'- -ACCGGUgauGUCCGa---CUgUGGUGCCc -5'
28877 3' -57.5 NC_006146.1 + 42716 0.74 0.462685
Target:  5'- cGcCCGCU-CGGGCUGGCAgCCGCGGa -3'
miRNA:   3'- aCcGGUGAuGUCCGACUGU-GGUGCCc -5'
28877 3' -57.5 NC_006146.1 + 96267 0.73 0.49988
Target:  5'- gUGGCCuACUACAGGg-GGCGCCGCa-- -3'
miRNA:   3'- -ACCGG-UGAUGUCCgaCUGUGGUGccc -5'
28877 3' -57.5 NC_006146.1 + 109316 0.73 0.49988
Target:  5'- cGGCCGCUGCAgccGGCUcuuccucagcGugGCCcuCGGGg -3'
miRNA:   3'- aCCGGUGAUGU---CCGA----------CugUGGu-GCCC- -5'
28877 3' -57.5 NC_006146.1 + 170087 0.73 0.49988
Target:  5'- aUGGCCgGCgggAgGGGCcGGCGCCGCaGGGg -3'
miRNA:   3'- -ACCGG-UGa--UgUCCGaCUGUGGUG-CCC- -5'
28877 3' -57.5 NC_006146.1 + 154648 0.72 0.53834
Target:  5'- uUGGCgCGCUGCcgccGGCUG-CACCguggugGCGGGg -3'
miRNA:   3'- -ACCG-GUGAUGu---CCGACuGUGG------UGCCC- -5'
28877 3' -57.5 NC_006146.1 + 55684 0.7 0.637879
Target:  5'- aGGCCAgcACGGGCacgGcCGCCGcCGGGg -3'
miRNA:   3'- aCCGGUgaUGUCCGa--CuGUGGU-GCCC- -5'
28877 3' -57.5 NC_006146.1 + 4367 0.72 0.577764
Target:  5'- gUGGCCACggccccGCGGGCUccccaggccGACGCCAUGa- -3'
miRNA:   3'- -ACCGGUGa-----UGUCCGA---------CUGUGGUGCcc -5'
28877 3' -57.5 NC_006146.1 + 56100 0.72 0.53834
Target:  5'- cGGCCACcaGCuccuccacgaAGGCgaagGugGCCGCGGGc -3'
miRNA:   3'- aCCGGUGa-UG----------UCCGa---CugUGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 41576 0.75 0.392989
Target:  5'- cGGCCGCcUACuGGCUGGCcgaggcggagagGCC-CGGGg -3'
miRNA:   3'- aCCGGUG-AUGuCCGACUG------------UGGuGCCC- -5'
28877 3' -57.5 NC_006146.1 + 85886 0.71 0.607743
Target:  5'- gGGCCACgcuggaACuAGGgUGAgagaGCCGCGGGg -3'
miRNA:   3'- aCCGGUGa-----UG-UCCgACUg---UGGUGCCC- -5'
28877 3' -57.5 NC_006146.1 + 40742 0.74 0.426995
Target:  5'- gGGCCcguGCUugGGGCUG--GCCACGGa -3'
miRNA:   3'- aCCGG---UGAugUCCGACugUGGUGCCc -5'
28877 3' -57.5 NC_006146.1 + 30212 0.72 0.537366
Target:  5'- gGGCCGCUGCgcccgccGGGCUGGCcggauACCcCGGa -3'
miRNA:   3'- aCCGGUGAUG-------UCCGACUG-----UGGuGCCc -5'
28877 3' -57.5 NC_006146.1 + 151392 0.7 0.637879
Target:  5'- -cGCUGCUGCAGGCgggggaUGGCGCgGCGGc -3'
miRNA:   3'- acCGGUGAUGUCCG------ACUGUGgUGCCc -5'
28877 3' -57.5 NC_006146.1 + 42138 0.7 0.657961
Target:  5'- cUGGCCAC-ACuccagaagaAGGCcucgGACACCcccuGCGGGa -3'
miRNA:   3'- -ACCGGUGaUG---------UCCGa---CUGUGG----UGCCC- -5'
28877 3' -57.5 NC_006146.1 + 132782 0.74 0.45723
Target:  5'- cGGUCGCUGCAGGCUcGCAgCUgcucagcagcugcagGCGGGg -3'
miRNA:   3'- aCCGGUGAUGUCCGAcUGU-GG---------------UGCCC- -5'
28877 3' -57.5 NC_006146.1 + 109590 0.73 0.49988
Target:  5'- aGGCCACc-CGGGCagGACGCCGCGc- -3'
miRNA:   3'- aCCGGUGauGUCCGa-CUGUGGUGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.