miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28877 5' -58.2 NC_006146.1 + 150729 0.65 0.847644
Target:  5'- gGGCCCUCUGCaaagaggcgagggAUCUCcuuGUAGUgCACGu -3'
miRNA:   3'- -CCGGGAGACGg------------UGGAGu--CGUCA-GUGU- -5'
28877 5' -58.2 NC_006146.1 + 42720 0.66 0.842891
Target:  5'- cGCCCcCcuggGCCGCCUCccGGC-GUCGCu -3'
miRNA:   3'- cCGGGaGa---CGGUGGAG--UCGuCAGUGu -5'
28877 5' -58.2 NC_006146.1 + 9479 0.66 0.842891
Target:  5'- cGCCCUCUGgCA--UCAGCcacuggacauacGGUCGCGg -3'
miRNA:   3'- cCGGGAGACgGUggAGUCG------------UCAGUGU- -5'
28877 5' -58.2 NC_006146.1 + 4769 0.66 0.842891
Target:  5'- uGGUccaCCUUUGCCACCg-AGCAG-UACGa -3'
miRNA:   3'- -CCG---GGAGACGGUGGagUCGUCaGUGU- -5'
28877 5' -58.2 NC_006146.1 + 47500 0.66 0.83482
Target:  5'- uGGUCUUCgGCCGCCgCGGcCAGUUcCAg -3'
miRNA:   3'- -CCGGGAGaCGGUGGaGUC-GUCAGuGU- -5'
28877 5' -58.2 NC_006146.1 + 67800 0.66 0.83482
Target:  5'- cGGCCaggCUCUGCCccGCCUCGGaAGUaaACAg -3'
miRNA:   3'- -CCGG---GAGACGG--UGGAGUCgUCAg-UGU- -5'
28877 5' -58.2 NC_006146.1 + 305 0.66 0.83482
Target:  5'- gGGCCCggcgcgCUcGCCACgCcCAGCuGUCAUu -3'
miRNA:   3'- -CCGGGa-----GA-CGGUG-GaGUCGuCAGUGu -5'
28877 5' -58.2 NC_006146.1 + 80249 0.66 0.83482
Target:  5'- --aCCUCUGCCACCcUCGccGCGG-CGCc -3'
miRNA:   3'- ccgGGAGACGGUGG-AGU--CGUCaGUGu -5'
28877 5' -58.2 NC_006146.1 + 166001 0.66 0.83482
Target:  5'- gGGUCCggcUCUGUCACCa-GGCGG-CGCAg -3'
miRNA:   3'- -CCGGG---AGACGGUGGagUCGUCaGUGU- -5'
28877 5' -58.2 NC_006146.1 + 42785 0.66 0.83482
Target:  5'- cGGCgCgugGCCGCCUCGGcCAGguuggcggucUCGCAg -3'
miRNA:   3'- -CCGgGagaCGGUGGAGUC-GUC----------AGUGU- -5'
28877 5' -58.2 NC_006146.1 + 126550 0.66 0.83482
Target:  5'- uGGCaCCUCguccccaucaGCCACCUguGCAGaaGCc -3'
miRNA:   3'- -CCG-GGAGa---------CGGUGGAguCGUCagUGu -5'
28877 5' -58.2 NC_006146.1 + 160378 0.66 0.826571
Target:  5'- cGCCCUUggcagGCCGCC-CAGUc-UCGCAa -3'
miRNA:   3'- cCGGGAGa----CGGUGGaGUCGucAGUGU- -5'
28877 5' -58.2 NC_006146.1 + 102538 0.66 0.826571
Target:  5'- aGGCCCUggUUGCCACCaacacugacaCGGCGGagGCc -3'
miRNA:   3'- -CCGGGA--GACGGUGGa---------GUCGUCagUGu -5'
28877 5' -58.2 NC_006146.1 + 106291 0.66 0.818149
Target:  5'- uGGCCUgc-GCCaugaACCUCAGCAagGUCAUc -3'
miRNA:   3'- -CCGGGagaCGG----UGGAGUCGU--CAGUGu -5'
28877 5' -58.2 NC_006146.1 + 150626 0.66 0.818149
Target:  5'- uGGCgaUCUCgGCCACCUCcacGUGGaUCACAa -3'
miRNA:   3'- -CCG--GGAGaCGGUGGAGu--CGUC-AGUGU- -5'
28877 5' -58.2 NC_006146.1 + 122699 0.66 0.809563
Target:  5'- aGGCCCUCcaguccccggaUGCCAagUCGGCgacGGUCAaCAc -3'
miRNA:   3'- -CCGGGAG-----------ACGGUggAGUCG---UCAGU-GU- -5'
28877 5' -58.2 NC_006146.1 + 96848 0.67 0.80082
Target:  5'- gGGCCCgcuucagccUCUGCCGCgUCAGCcGcCGa- -3'
miRNA:   3'- -CCGGG---------AGACGGUGgAGUCGuCaGUgu -5'
28877 5' -58.2 NC_006146.1 + 50408 0.67 0.80082
Target:  5'- cGUCCUCgGCCGCCagggaCGGCAGgcaggcCGCAa -3'
miRNA:   3'- cCGGGAGaCGGUGGa----GUCGUCa-----GUGU- -5'
28877 5' -58.2 NC_006146.1 + 62033 0.67 0.791929
Target:  5'- cGG-CCUCUGCCGCauucCAGCcGUCAg- -3'
miRNA:   3'- -CCgGGAGACGGUGga--GUCGuCAGUgu -5'
28877 5' -58.2 NC_006146.1 + 117741 0.67 0.773735
Target:  5'- aGCCUUCcgGCCACCgccGCAGUCcCGc -3'
miRNA:   3'- cCGGGAGa-CGGUGGaguCGUCAGuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.