miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28878 3' -48.2 NC_006146.1 + 21170 0.66 0.999541
Target:  5'- -aGAUaCGUGGGGGUGcuGACGGa---- -3'
miRNA:   3'- uaUUA-GCACCCCUACu-UUGCCacuua -5'
28878 3' -48.2 NC_006146.1 + 75865 0.66 0.999286
Target:  5'- cGUGAUCGUGGuGGAcGAGGcCGG-GAc- -3'
miRNA:   3'- -UAUUAGCACC-CCUaCUUU-GCCaCUua -5'
28878 3' -48.2 NC_006146.1 + 45082 0.66 0.999286
Target:  5'- ---cUCGUGGGGAgaGGGAgGGUGc-- -3'
miRNA:   3'- uauuAGCACCCCUa-CUUUgCCACuua -5'
28878 3' -48.2 NC_006146.1 + 165190 0.66 0.999118
Target:  5'- gGUGAUgGUGGuGAUGGugguGAUGGUGggUu -3'
miRNA:   3'- -UAUUAgCACCcCUACU----UUGCCACuuA- -5'
28878 3' -48.2 NC_006146.1 + 26743 0.67 0.998918
Target:  5'- -aGGUUG-GGGGuuaaGAGugGGUGAAUa -3'
miRNA:   3'- uaUUAGCaCCCCua--CUUugCCACUUA- -5'
28878 3' -48.2 NC_006146.1 + 71851 0.67 0.998398
Target:  5'- ----cUGUGGGGGUGAGGugucguuaggggUGGUGGAc -3'
miRNA:   3'- uauuaGCACCCCUACUUU------------GCCACUUa -5'
28878 3' -48.2 NC_006146.1 + 90521 0.67 0.998398
Target:  5'- cUGAUgGUGGuGAUGAAcaaccucccggaGCGGUGGAg -3'
miRNA:   3'- uAUUAgCACCcCUACUU------------UGCCACUUa -5'
28878 3' -48.2 NC_006146.1 + 35885 0.67 0.997681
Target:  5'- -----aGUGGGGGUGguGgGGUGAc- -3'
miRNA:   3'- uauuagCACCCCUACuuUgCCACUua -5'
28878 3' -48.2 NC_006146.1 + 40347 0.68 0.997232
Target:  5'- gGUAggCGUGGGGAucUGcgGCGGaGAAg -3'
miRNA:   3'- -UAUuaGCACCCCU--ACuuUGCCaCUUa -5'
28878 3' -48.2 NC_006146.1 + 139803 0.68 0.994659
Target:  5'- --uGUUGaUGGGGGUgGAGugGGUGAc- -3'
miRNA:   3'- uauUAGC-ACCCCUA-CUUugCCACUua -5'
28878 3' -48.2 NC_006146.1 + 63632 0.69 0.99167
Target:  5'- -aAcgCGUGGGGAUGGgcacccGGgGGUGAu- -3'
miRNA:   3'- uaUuaGCACCCCUACU------UUgCCACUua -5'
28878 3' -48.2 NC_006146.1 + 70170 0.69 0.99167
Target:  5'- ------aUGGGGGUGAggUGGUGGGc -3'
miRNA:   3'- uauuagcACCCCUACUuuGCCACUUa -5'
28878 3' -48.2 NC_006146.1 + 150859 0.7 0.983909
Target:  5'- --uGUCaaUGGGGAUGAGGcCGGUGAu- -3'
miRNA:   3'- uauUAGc-ACCCCUACUUU-GCCACUua -5'
28878 3' -48.2 NC_006146.1 + 167280 0.72 0.949327
Target:  5'- -cGcgCGUGGGGAUGGccGGCGG-GAGg -3'
miRNA:   3'- uaUuaGCACCCCUACU--UUGCCaCUUa -5'
28878 3' -48.2 NC_006146.1 + 168212 0.72 0.949327
Target:  5'- -cGcgCGUGGGGAUGGccGGCGG-GAGg -3'
miRNA:   3'- uaUuaGCACCCCUACU--UUGCCaCUUa -5'
28878 3' -48.2 NC_006146.1 + 169144 0.72 0.949327
Target:  5'- -cGcgCGUGGGGAUGGccGGCGG-GAGg -3'
miRNA:   3'- uaUuaGCACCCCUACU--UUGCCaCUUa -5'
28878 3' -48.2 NC_006146.1 + 170076 0.72 0.949327
Target:  5'- -cGcgCGUGGGGAUGGccGGCGG-GAGg -3'
miRNA:   3'- uaUuaGCACCCCUACU--UUGCCaCUUa -5'
28878 3' -48.2 NC_006146.1 + 153533 0.73 0.923638
Target:  5'- aGUGGggggCGUGGGGcugcuugGGAACGGUGGAg -3'
miRNA:   3'- -UAUUa---GCACCCCua-----CUUUGCCACUUa -5'
28878 3' -48.2 NC_006146.1 + 140213 0.84 0.453138
Target:  5'- gAUAuUCGUGGGGG-GAAACGGUGGAUu -3'
miRNA:   3'- -UAUuAGCACCCCUaCUUUGCCACUUA- -5'
28878 3' -48.2 NC_006146.1 + 30647 1.05 0.028254
Target:  5'- aAUAAUCGUGGGGAUGAAACGGUGAAUa -3'
miRNA:   3'- -UAUUAGCACCCCUACUUUGCCACUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.