Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28878 | 5' | -52.2 | NC_006146.1 | + | 140253 | 0.77 | 0.561905 |
Target: 5'- -uAUUCACCGUUUCaUCCCCACGAu-- -3' miRNA: 3'- uuUAGGUGGCAAAG-GGGGGUGCUuau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 31809 | 0.67 | 0.97471 |
Target: 5'- uAGUCCGCacugaGUUacagCCCCCCGCGc--- -3' miRNA: 3'- uUUAGGUGg----CAAa---GGGGGGUGCuuau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 79639 | 0.66 | 0.979654 |
Target: 5'- aGGGUCacagGCCGgcgagCCCCCCAUGGGg- -3' miRNA: 3'- -UUUAGg---UGGCaaa--GGGGGGUGCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 52953 | 0.66 | 0.98384 |
Target: 5'- -uAUCCcguuACCGUUcauggCCCUCCGCGGGg- -3' miRNA: 3'- uuUAGG----UGGCAAa----GGGGGGUGCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 23534 | 0.74 | 0.67765 |
Target: 5'- -uGUCCACUGcccagUUCCCCCCAgGAGc- -3' miRNA: 3'- uuUAGGUGGCa----AAGGGGGGUgCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 26612 | 0.74 | 0.67765 |
Target: 5'- -uGUCCACUGcccagUUCCCCCCAgGAGc- -3' miRNA: 3'- uuUAGGUGGCa----AAGGGGGGUgCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 133635 | 0.7 | 0.888346 |
Target: 5'- ---gCCAUCGUaUCCCCCauuGCGGAUAc -3' miRNA: 3'- uuuaGGUGGCAaAGGGGGg--UGCUUAU- -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 69234 | 0.69 | 0.914513 |
Target: 5'- ---cCCGuagcCCGUUUCCCCCCAgGGc-- -3' miRNA: 3'- uuuaGGU----GGCAAAGGGGGGUgCUuau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 168764 | 0.69 | 0.926087 |
Target: 5'- cGGGUCUucCCGggcUCCCCCuCACGggUGg -3' miRNA: 3'- -UUUAGGu-GGCaa-AGGGGG-GUGCuuAU- -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 68956 | 0.67 | 0.971644 |
Target: 5'- --cUCCGCCGUUgUCucaucggucaccgCCCCCGCGGc-- -3' miRNA: 3'- uuuAGGUGGCAA-AG-------------GGGGGUGCUuau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 170628 | 0.69 | 0.926087 |
Target: 5'- cGGGUCUucCCGggcUCCCCCuCACGggUGg -3' miRNA: 3'- -UUUAGGu-GGCaa-AGGGGG-GUGCuuAU- -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 167832 | 0.69 | 0.926087 |
Target: 5'- cGGGUCUucCCGggcUCCCCCuCACGggUGg -3' miRNA: 3'- -UUUAGGu-GGCaa-AGGGGG-GUGCuuAU- -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 14300 | 0.74 | 0.67765 |
Target: 5'- -uGUCCACUGcccagUUCCCCCCAgGAGc- -3' miRNA: 3'- uuUAGGUGGCa----AAGGGGGGUgCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 104178 | 0.67 | 0.962299 |
Target: 5'- cAGAUCCagucgcaggGCCGUcugCgCCCCCACGGGg- -3' miRNA: 3'- -UUUAGG---------UGGCAaa-G-GGGGGUGCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 17378 | 0.74 | 0.67765 |
Target: 5'- -uGUCCACUGcccagUUCCCCCCAgGAGc- -3' miRNA: 3'- uuUAGGUGGCa----AAGGGGGGUgCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 82058 | 0.69 | 0.920427 |
Target: 5'- ---cCCGCCGaUUCCCUaCCugGGAUAc -3' miRNA: 3'- uuuaGGUGGCaAAGGGG-GGugCUUAU- -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 36136 | 0.67 | 0.965735 |
Target: 5'- --uUCCACCGUggaaaUCCCaCUCugGGAc- -3' miRNA: 3'- uuuAGGUGGCAa----AGGG-GGGugCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 92056 | 0.67 | 0.97471 |
Target: 5'- gGAGUCUGCCGgaguucUCUCCCC-CGGAUc -3' miRNA: 3'- -UUUAGGUGGCaa----AGGGGGGuGCUUAu -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 20456 | 0.74 | 0.67765 |
Target: 5'- -uGUCCACUGcccagUUCCCCCCAgGAGc- -3' miRNA: 3'- uuUAGGUGGCa----AAGGGGGGUgCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 29690 | 0.74 | 0.67765 |
Target: 5'- -uGUCCACUGcccagUUCCCCCCAgGAGc- -3' miRNA: 3'- uuUAGGUGGCa----AAGGGGGGUgCUUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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