miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28878 5' -52.2 NC_006146.1 + 140253 0.77 0.561905
Target:  5'- -uAUUCACCGUUUCaUCCCCACGAu-- -3'
miRNA:   3'- uuUAGGUGGCAAAG-GGGGGUGCUuau -5'
28878 5' -52.2 NC_006146.1 + 31809 0.67 0.97471
Target:  5'- uAGUCCGCacugaGUUacagCCCCCCGCGc--- -3'
miRNA:   3'- uUUAGGUGg----CAAa---GGGGGGUGCuuau -5'
28878 5' -52.2 NC_006146.1 + 79639 0.66 0.979654
Target:  5'- aGGGUCacagGCCGgcgagCCCCCCAUGGGg- -3'
miRNA:   3'- -UUUAGg---UGGCaaa--GGGGGGUGCUUau -5'
28878 5' -52.2 NC_006146.1 + 52953 0.66 0.98384
Target:  5'- -uAUCCcguuACCGUUcauggCCCUCCGCGGGg- -3'
miRNA:   3'- uuUAGG----UGGCAAa----GGGGGGUGCUUau -5'
28878 5' -52.2 NC_006146.1 + 23534 0.74 0.67765
Target:  5'- -uGUCCACUGcccagUUCCCCCCAgGAGc- -3'
miRNA:   3'- uuUAGGUGGCa----AAGGGGGGUgCUUau -5'
28878 5' -52.2 NC_006146.1 + 26612 0.74 0.67765
Target:  5'- -uGUCCACUGcccagUUCCCCCCAgGAGc- -3'
miRNA:   3'- uuUAGGUGGCa----AAGGGGGGUgCUUau -5'
28878 5' -52.2 NC_006146.1 + 133635 0.7 0.888346
Target:  5'- ---gCCAUCGUaUCCCCCauuGCGGAUAc -3'
miRNA:   3'- uuuaGGUGGCAaAGGGGGg--UGCUUAU- -5'
28878 5' -52.2 NC_006146.1 + 69234 0.69 0.914513
Target:  5'- ---cCCGuagcCCGUUUCCCCCCAgGGc-- -3'
miRNA:   3'- uuuaGGU----GGCAAAGGGGGGUgCUuau -5'
28878 5' -52.2 NC_006146.1 + 168764 0.69 0.926087
Target:  5'- cGGGUCUucCCGggcUCCCCCuCACGggUGg -3'
miRNA:   3'- -UUUAGGu-GGCaa-AGGGGG-GUGCuuAU- -5'
28878 5' -52.2 NC_006146.1 + 68956 0.67 0.971644
Target:  5'- --cUCCGCCGUUgUCucaucggucaccgCCCCCGCGGc-- -3'
miRNA:   3'- uuuAGGUGGCAA-AG-------------GGGGGUGCUuau -5'
28878 5' -52.2 NC_006146.1 + 170628 0.69 0.926087
Target:  5'- cGGGUCUucCCGggcUCCCCCuCACGggUGg -3'
miRNA:   3'- -UUUAGGu-GGCaa-AGGGGG-GUGCuuAU- -5'
28878 5' -52.2 NC_006146.1 + 167832 0.69 0.926087
Target:  5'- cGGGUCUucCCGggcUCCCCCuCACGggUGg -3'
miRNA:   3'- -UUUAGGu-GGCaa-AGGGGG-GUGCuuAU- -5'
28878 5' -52.2 NC_006146.1 + 14300 0.74 0.67765
Target:  5'- -uGUCCACUGcccagUUCCCCCCAgGAGc- -3'
miRNA:   3'- uuUAGGUGGCa----AAGGGGGGUgCUUau -5'
28878 5' -52.2 NC_006146.1 + 104178 0.67 0.962299
Target:  5'- cAGAUCCagucgcaggGCCGUcugCgCCCCCACGGGg- -3'
miRNA:   3'- -UUUAGG---------UGGCAaa-G-GGGGGUGCUUau -5'
28878 5' -52.2 NC_006146.1 + 17378 0.74 0.67765
Target:  5'- -uGUCCACUGcccagUUCCCCCCAgGAGc- -3'
miRNA:   3'- uuUAGGUGGCa----AAGGGGGGUgCUUau -5'
28878 5' -52.2 NC_006146.1 + 82058 0.69 0.920427
Target:  5'- ---cCCGCCGaUUCCCUaCCugGGAUAc -3'
miRNA:   3'- uuuaGGUGGCaAAGGGG-GGugCUUAU- -5'
28878 5' -52.2 NC_006146.1 + 36136 0.67 0.965735
Target:  5'- --uUCCACCGUggaaaUCCCaCUCugGGAc- -3'
miRNA:   3'- uuuAGGUGGCAa----AGGG-GGGugCUUau -5'
28878 5' -52.2 NC_006146.1 + 92056 0.67 0.97471
Target:  5'- gGAGUCUGCCGgaguucUCUCCCC-CGGAUc -3'
miRNA:   3'- -UUUAGGUGGCaa----AGGGGGGuGCUUAu -5'
28878 5' -52.2 NC_006146.1 + 20456 0.74 0.67765
Target:  5'- -uGUCCACUGcccagUUCCCCCCAgGAGc- -3'
miRNA:   3'- uuUAGGUGGCa----AAGGGGGGUgCUUau -5'
28878 5' -52.2 NC_006146.1 + 29690 0.74 0.67765
Target:  5'- -uGUCCACUGcccagUUCCCCCCAgGAGc- -3'
miRNA:   3'- uuUAGGUGGCa----AAGGGGGGUgCUUau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.