miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28878 5' -52.2 NC_006146.1 + 170628 0.69 0.926087
Target:  5'- cGGGUCUucCCGggcUCCCCCuCACGggUGg -3'
miRNA:   3'- -UUUAGGu-GGCaa-AGGGGG-GUGCuuAU- -5'
28878 5' -52.2 NC_006146.1 + 167832 0.69 0.926087
Target:  5'- cGGGUCUucCCGggcUCCCCCuCACGggUGg -3'
miRNA:   3'- -UUUAGGu-GGCaa-AGGGGG-GUGCuuAU- -5'
28878 5' -52.2 NC_006146.1 + 169696 0.69 0.926087
Target:  5'- cGGGUCUucCCGggcUCCCCCuCACGggUGg -3'
miRNA:   3'- -UUUAGGu-GGCaa-AGGGGG-GUGCuuAU- -5'
28878 5' -52.2 NC_006146.1 + 168764 0.69 0.926087
Target:  5'- cGGGUCUucCCGggcUCCCCCuCACGggUGg -3'
miRNA:   3'- -UUUAGGu-GGCaa-AGGGGG-GUGCuuAU- -5'
28878 5' -52.2 NC_006146.1 + 82058 0.69 0.920427
Target:  5'- ---cCCGCCGaUUCCCUaCCugGGAUAc -3'
miRNA:   3'- uuuaGGUGGCaAAGGGG-GGugCUUAU- -5'
28878 5' -52.2 NC_006146.1 + 69234 0.69 0.914513
Target:  5'- ---cCCGuagcCCGUUUCCCCCCAgGGc-- -3'
miRNA:   3'- uuuaGGU----GGCAAAGGGGGGUgCUuau -5'
28878 5' -52.2 NC_006146.1 + 107819 0.7 0.901926
Target:  5'- cGAggCCACCGcaugUUCCCCCCGaGAGc- -3'
miRNA:   3'- -UUuaGGUGGCa---AAGGGGGGUgCUUau -5'
28878 5' -52.2 NC_006146.1 + 133635 0.7 0.888346
Target:  5'- ---gCCAUCGUaUCCCCCauuGCGGAUAc -3'
miRNA:   3'- uuuaGGUGGCAaAGGGGGg--UGCUUAU- -5'
28878 5' -52.2 NC_006146.1 + 37959 0.7 0.873803
Target:  5'- uAAUCCACCaccccccCCCUCCGCGggUGu -3'
miRNA:   3'- uUUAGGUGGcaaa---GGGGGGUGCuuAU- -5'
28878 5' -52.2 NC_006146.1 + 9118 0.71 0.850275
Target:  5'- -uAUCCACCGUggagccggUCUCCCACGGGg- -3'
miRNA:   3'- uuUAGGUGGCAaa------GGGGGGUGCUUau -5'
28878 5' -52.2 NC_006146.1 + 8984 0.71 0.850275
Target:  5'- -uAUCCACCGUggagccggUCUCCCACGGGg- -3'
miRNA:   3'- uuUAGGUGGCAaa------GGGGGGUGCUUau -5'
28878 5' -52.2 NC_006146.1 + 8918 0.71 0.850275
Target:  5'- -uAUCCACCGUggagccggUCUCCCACGGGg- -3'
miRNA:   3'- uuUAGGUGGCAaa------GGGGGGUGCUUau -5'
28878 5' -52.2 NC_006146.1 + 9051 0.71 0.850275
Target:  5'- -uAUCCACCGUggagccggUCUCCCACGGGg- -3'
miRNA:   3'- uuUAGGUGGCAaa------GGGGGGUGCUUau -5'
28878 5' -52.2 NC_006146.1 + 80877 0.72 0.778864
Target:  5'- --cUCCACCGcUUCCCCCUGCa---- -3'
miRNA:   3'- uuuAGGUGGCaAAGGGGGGUGcuuau -5'
28878 5' -52.2 NC_006146.1 + 126360 0.74 0.67765
Target:  5'- cAGUCCACCGcagCCCCCCACc---- -3'
miRNA:   3'- uUUAGGUGGCaaaGGGGGGUGcuuau -5'
28878 5' -52.2 NC_006146.1 + 14300 0.74 0.67765
Target:  5'- -uGUCCACUGcccagUUCCCCCCAgGAGc- -3'
miRNA:   3'- uuUAGGUGGCa----AAGGGGGGUgCUUau -5'
28878 5' -52.2 NC_006146.1 + 17378 0.74 0.67765
Target:  5'- -uGUCCACUGcccagUUCCCCCCAgGAGc- -3'
miRNA:   3'- uuUAGGUGGCa----AAGGGGGGUgCUUau -5'
28878 5' -52.2 NC_006146.1 + 20456 0.74 0.67765
Target:  5'- -uGUCCACUGcccagUUCCCCCCAgGAGc- -3'
miRNA:   3'- uuUAGGUGGCa----AAGGGGGGUgCUUau -5'
28878 5' -52.2 NC_006146.1 + 23534 0.74 0.67765
Target:  5'- -uGUCCACUGcccagUUCCCCCCAgGAGc- -3'
miRNA:   3'- uuUAGGUGGCa----AAGGGGGGUgCUUau -5'
28878 5' -52.2 NC_006146.1 + 26612 0.74 0.67765
Target:  5'- -uGUCCACUGcccagUUCCCCCCAgGAGc- -3'
miRNA:   3'- uuUAGGUGGCa----AAGGGGGGUgCUUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.