miRNA display CGI

Results 1 - 5 of 5 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
28879	5'	-49.7	NC_006146.1	+	43067	0.66	0.994512
	Target:  5'- gGUUgagGGGUGCCAGCgACUGGc---- -3' miRNA:   3'- aUAGaa-UCCACGGUCG-UGAUCacuua -5'
28879	5'	-49.7	NC_006146.1	+	95071	0.67	0.987142
	Target:  5'- -cUCgu-GGUGgCAGCugUGGUGGGg -3' miRNA:   3'- auAGaauCCACgGUCGugAUCACUUa -5'
28879	5'	-49.7	NC_006146.1	+	139464	0.69	0.973792
	Target:  5'- -----gGGGUGCCuGCACUGGaGAAg -3' miRNA:   3'- auagaaUCCACGGuCGUGAUCaCUUa -5'
28879	5'	-49.7	NC_006146.1	+	48319	0.75	0.764788
	Target:  5'- cGUCggAGGUGCUGGCGgUGGUGGGc -3' miRNA:   3'- aUAGaaUCCACGGUCGUgAUCACUUa -5'
28879	5'	-49.7	NC_006146.1	+	30418	1.05	0.016032
	Target:  5'- uUAUCUUAGGUGCCAGCACUAGUGAAUa -3' miRNA:   3'- -AUAGAAUCCACGGUCGUGAUCACUUA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home