miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2888 3' -59.4 NC_001493.1 + 15476 0.66 0.728274
Target:  5'- aUGGAGaCcCGgg-GCC-CCGCCGGUCCg -3'
miRNA:   3'- -AUCUC-GcGCagaCGGcGGUGGUCAGG- -5'
2888 3' -59.4 NC_001493.1 + 131031 0.66 0.71846
Target:  5'- aUGGAGaCcCGgugGCC-CCGCCGGUCCg -3'
miRNA:   3'- -AUCUC-GcGCagaCGGcGGUGGUCAGG- -5'
2888 3' -59.4 NC_001493.1 + 32745 0.66 0.698623
Target:  5'- ---cGCcCGUCccgGUCGCgACCGGUCCg -3'
miRNA:   3'- aucuCGcGCAGa--CGGCGgUGGUCAGG- -5'
2888 3' -59.4 NC_001493.1 + 31091 0.66 0.698623
Target:  5'- ---cGCGcCGUCaccgcgGCCGUCACCgggacGGUCCa -3'
miRNA:   3'- aucuCGC-GCAGa-----CGGCGGUGG-----UCAGG- -5'
2888 3' -59.4 NC_001493.1 + 128504 0.67 0.688618
Target:  5'- ---cGCGCGggcgCUgGCCGCCGCCgAGaucgCCa -3'
miRNA:   3'- aucuCGCGCa---GA-CGGCGGUGG-UCa---GG- -5'
2888 3' -59.4 NC_001493.1 + 54867 0.67 0.668477
Target:  5'- gGGAGCGagugGUgCgaGCCGCC-CCGGUCa -3'
miRNA:   3'- aUCUCGCg---CA-Ga-CGGCGGuGGUCAGg -5'
2888 3' -59.4 NC_001493.1 + 20672 0.67 0.64822
Target:  5'- -cGAGa------GCCGCCACCAGUCCg -3'
miRNA:   3'- auCUCgcgcagaCGGCGGUGGUCAGG- -5'
2888 3' -59.4 NC_001493.1 + 28380 0.68 0.597494
Target:  5'- aAGGGauCGUCUGCuCGCgACCGGgguggCCg -3'
miRNA:   3'- aUCUCgcGCAGACG-GCGgUGGUCa----GG- -5'
2888 3' -59.4 NC_001493.1 + 85239 0.68 0.587395
Target:  5'- ---cGCGUGUCcGCCGUgGCCAGUg- -3'
miRNA:   3'- aucuCGCGCAGaCGGCGgUGGUCAgg -5'
2888 3' -59.4 NC_001493.1 + 25240 0.69 0.517946
Target:  5'- cUGGAuuccGUGCGUC-GCCGCUACUGGcCCu -3'
miRNA:   3'- -AUCU----CGCGCAGaCGGCGGUGGUCaGG- -5'
2888 3' -59.4 NC_001493.1 + 34272 0.7 0.508272
Target:  5'- -uGGGUGgGUCcGCCaGCUGCCGGUUCg -3'
miRNA:   3'- auCUCGCgCAGaCGG-CGGUGGUCAGG- -5'
2888 3' -59.4 NC_001493.1 + 31456 0.71 0.434
Target:  5'- -uGAGCGCGaaaguguaUCUGUCGaacauCCACCuGUCCg -3'
miRNA:   3'- auCUCGCGC--------AGACGGC-----GGUGGuCAGG- -5'
2888 3' -59.4 NC_001493.1 + 12950 0.71 0.407806
Target:  5'- ---cGCGCGggcgCUgGCCGCCGCCgAGUCg -3'
miRNA:   3'- aucuCGCGCa---GA-CGGCGGUGG-UCAGg -5'
2888 3' -59.4 NC_001493.1 + 14467 1.08 0.00131
Target:  5'- gAGAGCGCGUCUGCCGCCACCAGUCCc -3'
miRNA:   3'- aUCUCGCGCAGACGGCGGUGGUCAGG- -5'
2888 3' -59.4 NC_001493.1 + 130022 1.09 0.001173
Target:  5'- gUAGAGCGCGUCUGCCGCCACCAGUCCc -3'
miRNA:   3'- -AUCUCGCGCAGACGGCGGUGGUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.