miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2888 5' -52.4 NC_001493.1 + 39496 0.66 0.978134
Target:  5'- -cGGACGGagcucGUGAUCGAGucguccguGGUCGcCCCc -3'
miRNA:   3'- gaCCUGUC-----CACUAGCUC--------CUAGUuGGG- -5'
2888 5' -52.4 NC_001493.1 + 47979 0.7 0.87756
Target:  5'- -gGGAUGGGUG-UCGAcu-UCAACCCg -3'
miRNA:   3'- gaCCUGUCCACuAGCUccuAGUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 54181 0.66 0.98253
Target:  5'- aCUGGcgaAGGUGAagCGAGGGgccgCgAACCUg -3'
miRNA:   3'- -GACCug-UCCACUa-GCUCCUa---G-UUGGG- -5'
2888 5' -52.4 NC_001493.1 + 60133 0.66 0.975394
Target:  5'- -cGGACAGGUGGacucaucgaaauuUCGGGuucggagaGGUCAGUCCa -3'
miRNA:   3'- gaCCUGUCCACU-------------AGCUC--------CUAGUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 60399 0.66 0.972692
Target:  5'- --cGAUAGGUcacacguGUCGAGGGUCAccaagccaccggcGCCCg -3'
miRNA:   3'- gacCUGUCCAc------UAGCUCCUAGU-------------UGGG- -5'
2888 5' -52.4 NC_001493.1 + 66525 0.69 0.923023
Target:  5'- -gGGAC-GGUGggCGAGGGUgggcagaaCGACCUc -3'
miRNA:   3'- gaCCUGuCCACuaGCUCCUA--------GUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 67555 0.68 0.938783
Target:  5'- uUGGgaACAcGGUGAUCGAGu-UCAagacACCCa -3'
miRNA:   3'- gACC--UGU-CCACUAGCUCcuAGU----UGGG- -5'
2888 5' -52.4 NC_001493.1 + 71944 0.68 0.938783
Target:  5'- -gGGACAGGUGAagGccaucuugaacGGGAagGGCCUg -3'
miRNA:   3'- gaCCUGUCCACUagC-----------UCCUagUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 80401 0.68 0.943536
Target:  5'- -gGGACA-GUGGUCGccgcacgccuucGGGAUCucuCCCa -3'
miRNA:   3'- gaCCUGUcCACUAGC------------UCCUAGuu-GGG- -5'
2888 5' -52.4 NC_001493.1 + 81285 0.67 0.955931
Target:  5'- -cGGGgAGuaucucGUGAUUGAGGAUCGAgaucuucCCCg -3'
miRNA:   3'- gaCCUgUC------CACUAGCUCCUAGUU-------GGG- -5'
2888 5' -52.4 NC_001493.1 + 82418 0.67 0.963656
Target:  5'- aUGGACagaacGGGuUGAacgcgacaauaUCGGGGGUggcCAGCCCg -3'
miRNA:   3'- gACCUG-----UCC-ACU-----------AGCUCCUA---GUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 85540 0.68 0.938783
Target:  5'- aUGGACucGGUGAUUGgaAGGGcCGugCCg -3'
miRNA:   3'- gACCUGu-CCACUAGC--UCCUaGUugGG- -5'
2888 5' -52.4 NC_001493.1 + 87692 0.66 0.970083
Target:  5'- -gGGGCAGGUcccgggguaGGUcCGGGGGUaGAUCCg -3'
miRNA:   3'- gaCCUGUCCA---------CUA-GCUCCUAgUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 87746 0.66 0.970083
Target:  5'- -gGGGCAGGUcccgggguaGGUcCGGGGGUaGAUCCg -3'
miRNA:   3'- gaCCUGUCCA---------CUA-GCUCCUAgUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 87925 0.66 0.978134
Target:  5'- -gGGGCAGGUccaguuuAUCGAGG-UCAugGCUCa -3'
miRNA:   3'- gaCCUGUCCAc------UAGCUCCuAGU--UGGG- -5'
2888 5' -52.4 NC_001493.1 + 88480 0.69 0.897176
Target:  5'- -cGGACgGGGUGAUCGGgcccacguacgguGGGUugacacaCGACCCg -3'
miRNA:   3'- gaCCUG-UCCACUAGCU-------------CCUA-------GUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 88854 0.66 0.975653
Target:  5'- aCUGGACgagaaaacaaAGG-GAuUCGGGGA--GACCCu -3'
miRNA:   3'- -GACCUG----------UCCaCU-AGCUCCUagUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 90615 0.66 0.975394
Target:  5'- aUGGAC-GGUGcgcUCG-GGGUCAugagccacaucaaGCCCg -3'
miRNA:   3'- gACCUGuCCACu--AGCuCCUAGU-------------UGGG- -5'
2888 5' -52.4 NC_001493.1 + 93318 0.66 0.97487
Target:  5'- aUGGuuCGGGUGAccgCGcGGAccggugcgcucguaUCGACCCg -3'
miRNA:   3'- gACCu-GUCCACUa--GCuCCU--------------AGUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 97072 0.67 0.952303
Target:  5'- -cGGACAGGcuccaccUCG-GGGUCuGCCCg -3'
miRNA:   3'- gaCCUGUCCacu----AGCuCCUAGuUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.