miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28880 3' -50.7 NC_006146.1 + 108872 0.66 0.996752
Target:  5'- -gGCuGGAAUgcGGCAgagGCcGAGCGCCg -3'
miRNA:   3'- agCG-CUUUAaaCCGUg--UGuCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 55017 0.66 0.996752
Target:  5'- -gGCGGGAUgggGGCGgGCGGgaugggggucGGgGCCg -3'
miRNA:   3'- agCGCUUUAaa-CCGUgUGUC----------UCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 126450 0.66 0.996698
Target:  5'- gCGUGGGAUUccacgggaggcuaUGGCAC---GGGUGCCa -3'
miRNA:   3'- aGCGCUUUAA-------------ACCGUGuguCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 170093 0.66 0.996698
Target:  5'- -gGCGGGAgg-GGCcggcgccGCAgGGGGgGCCg -3'
miRNA:   3'- agCGCUUUaaaCCG-------UGUgUCUCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 94022 0.66 0.996533
Target:  5'- gUGCGGcccggcaggGGCACgGCcccGAGCGCCg -3'
miRNA:   3'- aGCGCUuuaaa----CCGUG-UGu--CUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 53755 0.66 0.996181
Target:  5'- -gGCGAAGacgggcGGCGgGCGGAGgucuCGCCg -3'
miRNA:   3'- agCGCUUUaaa---CCGUgUGUCUC----GCGG- -5'
28880 3' -50.7 NC_006146.1 + 77261 0.66 0.996181
Target:  5'- gUGUGAAgg-UGGCGagcgcCACAGAgugacuuacaGCGCCg -3'
miRNA:   3'- aGCGCUUuaaACCGU-----GUGUCU----------CGCGG- -5'
28880 3' -50.7 NC_006146.1 + 61297 0.66 0.996181
Target:  5'- gUCGCGu-GUUUgcGGCGCGCGGcGUccuGCCc -3'
miRNA:   3'- -AGCGCuuUAAA--CCGUGUGUCuCG---CGG- -5'
28880 3' -50.7 NC_006146.1 + 23329 0.66 0.99553
Target:  5'- gCGCGAGua-UGGCccuGCAGAccgaccucaGCGCCu -3'
miRNA:   3'- aGCGCUUuaaACCGug-UGUCU---------CGCGG- -5'
28880 3' -50.7 NC_006146.1 + 126066 0.66 0.99553
Target:  5'- -aGgGuaaacgGGCACGaGGGGCGCCg -3'
miRNA:   3'- agCgCuuuaaaCCGUGUgUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 85601 0.66 0.99553
Target:  5'- cCGCcucGGAAgcUGGCAC-CGGGGCaaaggGCCa -3'
miRNA:   3'- aGCG---CUUUaaACCGUGuGUCUCG-----CGG- -5'
28880 3' -50.7 NC_006146.1 + 48009 0.66 0.99546
Target:  5'- -gGCGGGAggcUUGGCgggggagGCACGGcGgGCCg -3'
miRNA:   3'- agCGCUUUa--AACCG-------UGUGUCuCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 47045 0.66 0.99546
Target:  5'- gUGCGAGAaggGGCcgguCGCcggugucggugagGGGGCGCCu -3'
miRNA:   3'- aGCGCUUUaaaCCGu---GUG-------------UCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 113560 0.66 0.995318
Target:  5'- cCGCGGAAgUUGGCGCuCcaugcugacccucgGGAGagGCCg -3'
miRNA:   3'- aGCGCUUUaAACCGUGuG--------------UCUCg-CGG- -5'
28880 3' -50.7 NC_006146.1 + 128817 0.66 0.994791
Target:  5'- cCGCGAAGgacGGCGCGguccaGGAGCagguaagcccgGCCa -3'
miRNA:   3'- aGCGCUUUaaaCCGUGUg----UCUCG-----------CGG- -5'
28880 3' -50.7 NC_006146.1 + 81646 0.66 0.994791
Target:  5'- cCGgGAcGUUggGGCuCGgAGGGUGCCg -3'
miRNA:   3'- aGCgCUuUAAa-CCGuGUgUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 14206 0.66 0.994791
Target:  5'- aCGgGGAGgcggUGGCGCGCAacgcGGGCcuucugGCCg -3'
miRNA:   3'- aGCgCUUUaa--ACCGUGUGU----CUCG------CGG- -5'
28880 3' -50.7 NC_006146.1 + 90041 0.66 0.993957
Target:  5'- -aGUGA----UGGCAcCGCGGGGUGCg -3'
miRNA:   3'- agCGCUuuaaACCGU-GUGUCUCGCGg -5'
28880 3' -50.7 NC_006146.1 + 130287 0.67 0.993501
Target:  5'- aCGCGGGAgaagcagcggcGGCAUGCGGAGguucggcCGCCc -3'
miRNA:   3'- aGCGCUUUaaa--------CCGUGUGUCUC-------GCGG- -5'
28880 3' -50.7 NC_006146.1 + 43200 0.67 0.993018
Target:  5'- cUCGCGGGA---GGCGgggAUGGGGCGCUg -3'
miRNA:   3'- -AGCGCUUUaaaCCGUg--UGUCUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.