Results 1 - 20 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28880 | 3' | -50.7 | NC_006146.1 | + | 108872 | 0.66 | 0.996752 |
Target: 5'- -gGCuGGAAUgcGGCAgagGCcGAGCGCCg -3' miRNA: 3'- agCG-CUUUAaaCCGUg--UGuCUCGCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 77261 | 0.66 | 0.996181 |
Target: 5'- gUGUGAAgg-UGGCGagcgcCACAGAgugacuuacaGCGCCg -3' miRNA: 3'- aGCGCUUuaaACCGU-----GUGUCU----------CGCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 85601 | 0.66 | 0.99553 |
Target: 5'- cCGCcucGGAAgcUGGCAC-CGGGGCaaaggGCCa -3' miRNA: 3'- aGCG---CUUUaaACCGUGuGUCUCG-----CGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 126066 | 0.66 | 0.99553 |
Target: 5'- -aGgGuaaacgGGCACGaGGGGCGCCg -3' miRNA: 3'- agCgCuuuaaaCCGUGUgUCUCGCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 48009 | 0.66 | 0.99546 |
Target: 5'- -gGCGGGAggcUUGGCgggggagGCACGGcGgGCCg -3' miRNA: 3'- agCGCUUUa--AACCG-------UGUGUCuCgCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 47045 | 0.66 | 0.99546 |
Target: 5'- gUGCGAGAaggGGCcgguCGCcggugucggugagGGGGCGCCu -3' miRNA: 3'- aGCGCUUUaaaCCGu---GUG-------------UCUCGCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 55017 | 0.66 | 0.996752 |
Target: 5'- -gGCGGGAUgggGGCGgGCGGgaugggggucGGgGCCg -3' miRNA: 3'- agCGCUUUAaa-CCGUgUGUC----------UCgCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 170093 | 0.66 | 0.996698 |
Target: 5'- -gGCGGGAgg-GGCcggcgccGCAgGGGGgGCCg -3' miRNA: 3'- agCGCUUUaaaCCG-------UGUgUCUCgCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 53755 | 0.66 | 0.996181 |
Target: 5'- -gGCGAAGacgggcGGCGgGCGGAGgucuCGCCg -3' miRNA: 3'- agCGCUUUaaa---CCGUgUGUCUC----GCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 113560 | 0.66 | 0.995318 |
Target: 5'- cCGCGGAAgUUGGCGCuCcaugcugacccucgGGAGagGCCg -3' miRNA: 3'- aGCGCUUUaAACCGUGuG--------------UCUCg-CGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 126450 | 0.66 | 0.996698 |
Target: 5'- gCGUGGGAUUccacgggaggcuaUGGCAC---GGGUGCCa -3' miRNA: 3'- aGCGCUUUAA-------------ACCGUGuguCUCGCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 61297 | 0.66 | 0.996181 |
Target: 5'- gUCGCGu-GUUUgcGGCGCGCGGcGUccuGCCc -3' miRNA: 3'- -AGCGCuuUAAA--CCGUGUGUCuCG---CGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 23329 | 0.66 | 0.99553 |
Target: 5'- gCGCGAGua-UGGCccuGCAGAccgaccucaGCGCCu -3' miRNA: 3'- aGCGCUUuaaACCGug-UGUCU---------CGCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 81646 | 0.66 | 0.994791 |
Target: 5'- cCGgGAcGUUggGGCuCGgAGGGUGCCg -3' miRNA: 3'- aGCgCUuUAAa-CCGuGUgUCUCGCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 14206 | 0.66 | 0.994791 |
Target: 5'- aCGgGGAGgcggUGGCGCGCAacgcGGGCcuucugGCCg -3' miRNA: 3'- aGCgCUUUaa--ACCGUGUGU----CUCG------CGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 90041 | 0.66 | 0.993957 |
Target: 5'- -aGUGA----UGGCAcCGCGGGGUGCg -3' miRNA: 3'- agCGCUuuaaACCGU-GUGUCUCGCGg -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 128817 | 0.66 | 0.994791 |
Target: 5'- cCGCGAAGgacGGCGCGguccaGGAGCagguaagcccgGCCa -3' miRNA: 3'- aGCGCUUUaaaCCGUGUg----UCUCG-----------CGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 94022 | 0.66 | 0.996533 |
Target: 5'- gUGCGGcccggcaggGGCACgGCcccGAGCGCCg -3' miRNA: 3'- aGCGCUuuaaa----CCGUG-UGu--CUCGCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 155453 | 0.67 | 0.988045 |
Target: 5'- cCGUGAcucugGAggacgGGgACGCGGAGgGCCu -3' miRNA: 3'- aGCGCU-----UUaaa--CCgUGUGUCUCgCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 158532 | 0.67 | 0.988045 |
Target: 5'- cCGUGAcucugGAggacgGGgACGCGGAGgGCCu -3' miRNA: 3'- aGCGCU-----UUaaa--CCgUGUGUCUCgCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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