Results 21 - 40 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28880 | 3' | -50.7 | NC_006146.1 | + | 168432 | 0.67 | 0.991967 |
Target: 5'- -gGCGggGgagagGGgGCAgGGcuGGCGCCg -3' miRNA: 3'- agCGCuuUaaa--CCgUGUgUC--UCGCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 169364 | 0.67 | 0.991967 |
Target: 5'- -gGCGggGgagagGGgGCAgGGcuGGCGCCg -3' miRNA: 3'- agCGCuuUaaa--CCgUGUgUC--UCGCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 50786 | 0.67 | 0.988045 |
Target: 5'- -gGUGGugug-GGCACACGG-GCGUCc -3' miRNA: 3'- agCGCUuuaaaCCGUGUGUCuCGCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 157830 | 0.67 | 0.990416 |
Target: 5'- cCGCGc----UGGCcccggaggggacggGCACcGAGCGCCg -3' miRNA: 3'- aGCGCuuuaaACCG--------------UGUGuCUCGCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 58898 | 0.67 | 0.991967 |
Target: 5'- aCGCccacuUUUGGCGCgaccuGCAGGGCgagGCCa -3' miRNA: 3'- aGCGcuuu-AAACCGUG-----UGUCUCG---CGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 44941 | 0.67 | 0.990793 |
Target: 5'- cUCGUGGccaggGGCGCGgGGAG-GCCc -3' miRNA: 3'- -AGCGCUuuaaaCCGUGUgUCUCgCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 130287 | 0.67 | 0.993501 |
Target: 5'- aCGCGGGAgaagcagcggcGGCAUGCGGAGguucggcCGCCc -3' miRNA: 3'- aGCGCUUUaaa--------CCGUGUGUCUC-------GCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 44893 | 0.67 | 0.993018 |
Target: 5'- cUCGCGA----UGGUACcuugACGGccGGCGCUg -3' miRNA: 3'- -AGCGCUuuaaACCGUG----UGUC--UCGCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 3793 | 0.67 | 0.991967 |
Target: 5'- -gGgGggGgggGGCACGCGGGGgaugGCCa -3' miRNA: 3'- agCgCuuUaaaCCGUGUGUCUCg---CGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 64208 | 0.67 | 0.988928 |
Target: 5'- gUCGCGGAGcuccggcaggaGGCACAUcu-GCGCCu -3' miRNA: 3'- -AGCGCUUUaaa--------CCGUGUGucuCGCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 158532 | 0.67 | 0.988045 |
Target: 5'- cCGUGAcucugGAggacgGGgACGCGGAGgGCCu -3' miRNA: 3'- aGCGCU-----UUaaa--CCgUGUGUCUCgCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 155453 | 0.67 | 0.988045 |
Target: 5'- cCGUGAcucugGAggacgGGgACGCGGAGgGCCu -3' miRNA: 3'- aGCGCU-----UUaaa--CCgUGUGUCUCgCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 43034 | 0.67 | 0.992715 |
Target: 5'- cCGCGAAcgUgccUGGCggauACGCcgccuggcgguugaGGGGUGCCa -3' miRNA: 3'- aGCGCUUuaA---ACCG----UGUG--------------UCUCGCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 43200 | 0.67 | 0.993018 |
Target: 5'- cUCGCGGGA---GGCGgggAUGGGGCGCUg -3' miRNA: 3'- -AGCGCUUUaaaCCGUg--UGUCUCGCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 143141 | 0.67 | 0.988045 |
Target: 5'- cCGUGAcucugGAggacgGGgACGCGGAGgGCCu -3' miRNA: 3'- aGCGCU-----UUaaa--CCgUGUGUCUCgCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 136796 | 0.67 | 0.988045 |
Target: 5'- cCGUGAAcgg-GGCGCGCuGGGuCGCg -3' miRNA: 3'- aGCGCUUuaaaCCGUGUGuCUC-GCGg -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 32965 | 0.67 | 0.988045 |
Target: 5'- cCGUGAAcgg-GGCGCGCuGGGuCGCg -3' miRNA: 3'- aGCGCUUuaaaCCGUGUGuCUC-GCGg -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 10284 | 0.67 | 0.988045 |
Target: 5'- aCGCGGAGc-UGGCAUGCcaGGCgGCCg -3' miRNA: 3'- aGCGCUUUaaACCGUGUGucUCG-CGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 166017 | 0.67 | 0.991967 |
Target: 5'- aUGCGGuugugGGCAUcgGGGGUGCCu -3' miRNA: 3'- aGCGCUuuaaaCCGUGugUCUCGCGG- -5' |
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28880 | 3' | -50.7 | NC_006146.1 | + | 42679 | 0.67 | 0.992715 |
Target: 5'- cCGCGGugggcugccugaGGCugGCAGAGCcCCc -3' miRNA: 3'- aGCGCUuuaaa-------CCGugUGUCUCGcGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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