miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28880 3' -50.7 NC_006146.1 + 30109 1.12 0.006393
Target:  5'- cUCGCGAAAUUUGGCACACAGAGCGCCc -3'
miRNA:   3'- -AGCGCUUUAAACCGUGUGUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 117696 0.82 0.408989
Target:  5'- cCGCGGAGUUUGGCACGCcgccccccaaggccGGGGCcgagGCCg -3'
miRNA:   3'- aGCGCUUUAAACCGUGUG--------------UCUCG----CGG- -5'
28880 3' -50.7 NC_006146.1 + 96951 0.76 0.704263
Target:  5'- cCGCGAGucugGGCGC-CAGGGUGUCg -3'
miRNA:   3'- aGCGCUUuaaaCCGUGuGUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 157035 0.76 0.72478
Target:  5'- cUGCGggGgacgcUGGCACACcGGGcCGCCg -3'
miRNA:   3'- aGCGCuuUaa---ACCGUGUGuCUC-GCGG- -5'
28880 3' -50.7 NC_006146.1 + 144723 0.76 0.72478
Target:  5'- cUGCGggGgacgcUGGCACACcGGGcCGCCg -3'
miRNA:   3'- aGCGCuuUaa---ACCGUGUGuCUC-GCGG- -5'
28880 3' -50.7 NC_006146.1 + 147801 0.76 0.72478
Target:  5'- cUGCGggGgacgcUGGCACACcGGGcCGCCg -3'
miRNA:   3'- aGCGCuuUaa---ACCGUGUGuCUC-GCGG- -5'
28880 3' -50.7 NC_006146.1 + 141646 0.76 0.72478
Target:  5'- cUGCGggGgacgcUGGCACACcGGGcCGCCg -3'
miRNA:   3'- aGCGCuuUaa---ACCGUGUGuCUC-GCGG- -5'
28880 3' -50.7 NC_006146.1 + 150879 0.76 0.72478
Target:  5'- cUGCGggGgacgcUGGCACACcGGGcCGCCg -3'
miRNA:   3'- aGCGCuuUaa---ACCGUGUGuCUC-GCGG- -5'
28880 3' -50.7 NC_006146.1 + 153957 0.76 0.72478
Target:  5'- cUGCGggGgacgcUGGCACACcGGGcCGCCg -3'
miRNA:   3'- aGCGCuuUaa---ACCGUGUGuCUC-GCGG- -5'
28880 3' -50.7 NC_006146.1 + 63086 0.75 0.774413
Target:  5'- -gGCGggGcUUGGUACGCAGAagGgGCCc -3'
miRNA:   3'- agCGCuuUaAACCGUGUGUCU--CgCGG- -5'
28880 3' -50.7 NC_006146.1 + 42977 0.75 0.783975
Target:  5'- gCGCGGAGUUUGuGgGCAgCAGcccGGCGCCc -3'
miRNA:   3'- aGCGCUUUAAAC-CgUGU-GUC---UCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 38755 0.74 0.829421
Target:  5'- -gGCGugGUUgaUGGCACAUAGGGgGUCg -3'
miRNA:   3'- agCGCuuUAA--ACCGUGUGUCUCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 23727 0.73 0.837973
Target:  5'- -gGCGAAGg--GGCGC-CGGucuGCGCCg -3'
miRNA:   3'- agCGCUUUaaaCCGUGuGUCu--CGCGG- -5'
28880 3' -50.7 NC_006146.1 + 27878 0.73 0.849611
Target:  5'- cUGCGAAAaUUGGCACGCaagcggaggggaccgGGAGCuGCUc -3'
miRNA:   3'- aGCGCUUUaAACCGUGUG---------------UCUCG-CGG- -5'
28880 3' -50.7 NC_006146.1 + 34509 0.73 0.862408
Target:  5'- cCGCGAGAUUuggGGUAgGCGGAGCuUCa -3'
miRNA:   3'- aGCGCUUUAAa--CCGUgUGUCUCGcGG- -5'
28880 3' -50.7 NC_006146.1 + 69847 0.73 0.862408
Target:  5'- -gGCGAGAagcgGGUACGCAG-GCGCa -3'
miRNA:   3'- agCGCUUUaaa-CCGUGUGUCuCGCGg -5'
28880 3' -50.7 NC_006146.1 + 115187 0.73 0.870121
Target:  5'- aCGCGGAGgccagcGGCGgGCAGAGCcCCc -3'
miRNA:   3'- aGCGCUUUaaa---CCGUgUGUCUCGcGG- -5'
28880 3' -50.7 NC_006146.1 + 42103 0.72 0.877608
Target:  5'- uUCGCGGAc---GGCGCACGacuacGAGgGCCu -3'
miRNA:   3'- -AGCGCUUuaaaCCGUGUGU-----CUCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 76578 0.72 0.884861
Target:  5'- aUUGCGGGAUggGGC-CGCAGAG-GCa -3'
miRNA:   3'- -AGCGCUUUAaaCCGuGUGUCUCgCGg -5'
28880 3' -50.7 NC_006146.1 + 72294 0.72 0.891877
Target:  5'- cCGUGAcAUUUGGUGCAguGuuguucuccaguGGCGCCa -3'
miRNA:   3'- aGCGCUuUAAACCGUGUguC------------UCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.