miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28880 3' -50.7 NC_006146.1 + 76374 0.72 0.903247
Target:  5'- cCGCcacGAGAg--GGCGCGCcgggggagggaccgGGGGCGCCg -3'
miRNA:   3'- aGCG---CUUUaaaCCGUGUG--------------UCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 102854 0.72 0.90518
Target:  5'- cUCGUGGAGcugcuCACACuGAGCGCCa -3'
miRNA:   3'- -AGCGCUUUaaaccGUGUGuCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 2101 0.71 0.910842
Target:  5'- -aGCGAGcaaggagaacgccucGGCACGgAGAGCGCCc -3'
miRNA:   3'- agCGCUUuaaa-----------CCGUGUgUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 53358 0.71 0.911459
Target:  5'- gCGUGAGGUcUUGGCugGCccGGCGCUu -3'
miRNA:   3'- aGCGCUUUA-AACCGugUGucUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 132567 0.71 0.911459
Target:  5'- gCGUGAGAUcggUGGCAC--GGAGCGgCa -3'
miRNA:   3'- aGCGCUUUAa--ACCGUGugUCUCGCgG- -5'
28880 3' -50.7 NC_006146.1 + 155554 0.71 0.917487
Target:  5'- -gGCGuuGgagccgGGCucGCGCGGGGCGCCc -3'
miRNA:   3'- agCGCuuUaaa---CCG--UGUGUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 129335 0.71 0.917487
Target:  5'- cUCGCGca-----GCGCGCGGAGCgGCCg -3'
miRNA:   3'- -AGCGCuuuaaacCGUGUGUCUCG-CGG- -5'
28880 3' -50.7 NC_006146.1 + 156382 0.71 0.917488
Target:  5'- aCGCGGAGacaaaaUGGCGCcCAGAuCGCCu -3'
miRNA:   3'- aGCGCUUUaa----ACCGUGuGUCUcGCGG- -5'
28880 3' -50.7 NC_006146.1 + 153304 0.71 0.917488
Target:  5'- aCGCGGAGacaaaaUGGCGCcCAGAuCGCCu -3'
miRNA:   3'- aGCGCUUUaa----ACCGUGuGUCUcGCGG- -5'
28880 3' -50.7 NC_006146.1 + 150226 0.71 0.917488
Target:  5'- aCGCGGAGacaaaaUGGCGCcCAGAuCGCCu -3'
miRNA:   3'- aGCGCUUUaa----ACCGUGuGUCUcGCGG- -5'
28880 3' -50.7 NC_006146.1 + 147148 0.71 0.917488
Target:  5'- aCGCGGAGacaaaaUGGCGCcCAGAuCGCCu -3'
miRNA:   3'- aGCGCUUUaa----ACCGUGuGUCUcGCGG- -5'
28880 3' -50.7 NC_006146.1 + 144070 0.71 0.917488
Target:  5'- aCGCGGAGacaaaaUGGCGCcCAGAuCGCCu -3'
miRNA:   3'- aGCGCUUUaa----ACCGUGuGUCUcGCGG- -5'
28880 3' -50.7 NC_006146.1 + 91897 0.71 0.928784
Target:  5'- gUCGgGAG--UUGGCACuAguGGGCGCa -3'
miRNA:   3'- -AGCgCUUuaAACCGUG-UguCUCGCGg -5'
28880 3' -50.7 NC_006146.1 + 154625 0.71 0.932498
Target:  5'- aCGCGGAAggggaaguuggucuUUUGGCGCGCu--GcCGCCg -3'
miRNA:   3'- aGCGCUUU--------------AAACCGUGUGucuC-GCGG- -5'
28880 3' -50.7 NC_006146.1 + 96255 0.71 0.934052
Target:  5'- -aGCGAcgAGUacgUGGCcuacuACAgGGGGCGCCg -3'
miRNA:   3'- agCGCU--UUAa--ACCG-----UGUgUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 138340 0.71 0.934052
Target:  5'- cCGCGAGAUUUGGgguaGCGGAGCcUCa -3'
miRNA:   3'- aGCGCUUUAAACCgug-UGUCUCGcGG- -5'
28880 3' -50.7 NC_006146.1 + 132640 0.71 0.934052
Target:  5'- cCGCuccAGAUguuccaGGCACACAcGGCGCCg -3'
miRNA:   3'- aGCGc--UUUAaa----CCGUGUGUcUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 118956 0.71 0.934052
Target:  5'- -gGCGccagUUGGCGCGCAGAcCGCa -3'
miRNA:   3'- agCGCuuuaAACCGUGUGUCUcGCGg -5'
28880 3' -50.7 NC_006146.1 + 9693 0.7 0.948341
Target:  5'- -aGCuuuGAAG--UGGgGCACGGGGUGCCa -3'
miRNA:   3'- agCG---CUUUaaACCgUGUGUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 87256 0.7 0.948341
Target:  5'- -gGUGGAGgucUGGCcCGCAGAGCccccGCCa -3'
miRNA:   3'- agCGCUUUaa-ACCGuGUGUCUCG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.