miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28880 3' -50.7 NC_006146.1 + 43200 0.67 0.993018
Target:  5'- cUCGCGGGA---GGCGgggAUGGGGCGCUg -3'
miRNA:   3'- -AGCGCUUUaaaCCGUg--UGUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 165952 0.67 0.992918
Target:  5'- cUCGUGGccccUGGUccccgggGCACAGAGCacgGCCa -3'
miRNA:   3'- -AGCGCUuuaaACCG-------UGUGUCUCG---CGG- -5'
28880 3' -50.7 NC_006146.1 + 42679 0.67 0.992715
Target:  5'- cCGCGGugggcugccugaGGCugGCAGAGCcCCc -3'
miRNA:   3'- aGCGCUuuaaa-------CCGugUGUCUCGcGG- -5'
28880 3' -50.7 NC_006146.1 + 43034 0.67 0.992715
Target:  5'- cCGCGAAcgUgccUGGCggauACGCcgccuggcgguugaGGGGUGCCa -3'
miRNA:   3'- aGCGCUUuaA---ACCG----UGUG--------------UCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 166017 0.67 0.991967
Target:  5'- aUGCGGuugugGGCAUcgGGGGUGCCu -3'
miRNA:   3'- aGCGCUuuaaaCCGUGugUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 168432 0.67 0.991967
Target:  5'- -gGCGggGgagagGGgGCAgGGcuGGCGCCg -3'
miRNA:   3'- agCGCuuUaaa--CCgUGUgUC--UCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 167500 0.67 0.991967
Target:  5'- -gGCGggGgagagGGgGCAgGGcuGGCGCCg -3'
miRNA:   3'- agCGCuuUaaa--CCgUGUgUC--UCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 58898 0.67 0.991967
Target:  5'- aCGCccacuUUUGGCGCgaccuGCAGGGCgagGCCa -3'
miRNA:   3'- aGCGcuuu-AAACCGUG-----UGUCUCG---CGG- -5'
28880 3' -50.7 NC_006146.1 + 125211 0.67 0.991967
Target:  5'- cUGCGAcg---GGCGCuCAGAGC-CCu -3'
miRNA:   3'- aGCGCUuuaaaCCGUGuGUCUCGcGG- -5'
28880 3' -50.7 NC_006146.1 + 3793 0.67 0.991967
Target:  5'- -gGgGggGgggGGCACGCGGGGgaugGCCa -3'
miRNA:   3'- agCgCuuUaaaCCGUGUGUCUCg---CGG- -5'
28880 3' -50.7 NC_006146.1 + 169364 0.67 0.991967
Target:  5'- -gGCGggGgagagGGgGCAgGGcuGGCGCCg -3'
miRNA:   3'- agCGCuuUaaa--CCgUGUgUC--UCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 170295 0.67 0.991967
Target:  5'- -gGCGggGgagagGGgGCAgGGcuGGCGCCg -3'
miRNA:   3'- agCGCuuUaaa--CCgUGUgUC--UCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 152245 0.67 0.991278
Target:  5'- cUGCGAAGgccgGGCAUGCgaucccuggcugccuGGAGUGCUc -3'
miRNA:   3'- aGCGCUUUaaa-CCGUGUG---------------UCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 44941 0.67 0.990793
Target:  5'- cUCGUGGccaggGGCGCGgGGAG-GCCc -3'
miRNA:   3'- -AGCGCUuuaaaCCGUGUgUCUCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 157830 0.67 0.990416
Target:  5'- cCGCGc----UGGCcccggaggggacggGCACcGAGCGCCg -3'
miRNA:   3'- aGCGCuuuaaACCG--------------UGUGuCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 41875 0.67 0.989489
Target:  5'- cUCGUGAAgagGUUucUGGCguucguguuucaGCGCAGuAGCGCg -3'
miRNA:   3'- -AGCGCUU---UAA--ACCG------------UGUGUC-UCGCGg -5'
28880 3' -50.7 NC_006146.1 + 20952 0.67 0.989489
Target:  5'- -gGCccaGAAcuAUUucUGGCAgCAuCAGAGCGCCa -3'
miRNA:   3'- agCG---CUU--UAA--ACCGU-GU-GUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 37824 0.67 0.989489
Target:  5'- gUGCuGAAUaUGGgGCACAcAGUGCCa -3'
miRNA:   3'- aGCGcUUUAaACCgUGUGUcUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 64208 0.67 0.988928
Target:  5'- gUCGCGGAGcuccggcaggaGGCACAUcu-GCGCCu -3'
miRNA:   3'- -AGCGCUUUaaa--------CCGUGUGucuCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 158532 0.67 0.988045
Target:  5'- cCGUGAcucugGAggacgGGgACGCGGAGgGCCu -3'
miRNA:   3'- aGCGCU-----UUaaa--CCgUGUGUCUCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.