miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28880 3' -50.7 NC_006146.1 + 96951 0.76 0.704263
Target:  5'- cCGCGAGucugGGCGC-CAGGGUGUCg -3'
miRNA:   3'- aGCGCUUuaaaCCGUGuGUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 48218 0.69 0.970379
Target:  5'- cUG-GAGGgccUGGCGCGCcuggguGAGCGCCg -3'
miRNA:   3'- aGCgCUUUaa-ACCGUGUGu-----CUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 56501 0.69 0.975935
Target:  5'- gCGCGcAGUcgGGC-CGCGGGGuCGUCg -3'
miRNA:   3'- aGCGCuUUAaaCCGuGUGUCUC-GCGG- -5'
28880 3' -50.7 NC_006146.1 + 55017 0.66 0.996752
Target:  5'- -gGCGGGAUgggGGCGgGCGGgaugggggucGGgGCCg -3'
miRNA:   3'- agCGCUUUAaa-CCGUgUGUC----------UCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 72294 0.72 0.891877
Target:  5'- cCGUGAcAUUUGGUGCAguGuuguucuccaguGGCGCCa -3'
miRNA:   3'- aGCGCUuUAAACCGUGUguC------------UCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 2101 0.71 0.910842
Target:  5'- -aGCGAGcaaggagaacgccucGGCACGgAGAGCGCCc -3'
miRNA:   3'- agCGCUUuaaa-----------CCGUGUgUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 155554 0.71 0.917487
Target:  5'- -gGCGuuGgagccgGGCucGCGCGGGGCGCCc -3'
miRNA:   3'- agCGCuuUaaa---CCG--UGUGUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 129335 0.71 0.917487
Target:  5'- cUCGCGca-----GCGCGCGGAGCgGCCg -3'
miRNA:   3'- -AGCGCuuuaaacCGUGUGUCUCG-CGG- -5'
28880 3' -50.7 NC_006146.1 + 138340 0.71 0.934052
Target:  5'- cCGCGAGAUUUGGgguaGCGGAGCcUCa -3'
miRNA:   3'- aGCGCUUUAAACCgug-UGUCUCGcGG- -5'
28880 3' -50.7 NC_006146.1 + 93892 0.69 0.963961
Target:  5'- -gGCGGAAUUUGcgGCAgGGGGgGCCa -3'
miRNA:   3'- agCGCUUUAAACcgUGUgUCUCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 120049 0.7 0.956629
Target:  5'- gCGCGGAGacuggUGGCGCuGCu--GCGCCg -3'
miRNA:   3'- aGCGCUUUaa---ACCGUG-UGucuCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 96255 0.71 0.934052
Target:  5'- -aGCGAcgAGUacgUGGCcuacuACAgGGGGCGCCg -3'
miRNA:   3'- agCGCU--UUAa--ACCG-----UGUgUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 38755 0.74 0.829421
Target:  5'- -gGCGugGUUgaUGGCACAUAGGGgGUCg -3'
miRNA:   3'- agCGCuuUAA--ACCGUGUGUCUCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 98849 0.7 0.960412
Target:  5'- aCGgGAAGaaUGGCG-GCGGGGUGCCu -3'
miRNA:   3'- aGCgCUUUaaACCGUgUGUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 34509 0.73 0.862408
Target:  5'- cCGCGAGAUUuggGGUAgGCGGAGCuUCa -3'
miRNA:   3'- aGCGCUUUAAa--CCGUgUGUCUCGcGG- -5'
28880 3' -50.7 NC_006146.1 + 154625 0.71 0.932498
Target:  5'- aCGCGGAAggggaaguuggucuUUUGGCGCGCu--GcCGCCg -3'
miRNA:   3'- aGCGCUUU--------------AAACCGUGUGucuC-GCGG- -5'
28880 3' -50.7 NC_006146.1 + 109130 0.7 0.960412
Target:  5'- -gGUGAuGUUUGG-GCACAGAG-GCCu -3'
miRNA:   3'- agCGCUuUAAACCgUGUGUCUCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 130048 0.69 0.973261
Target:  5'- cCGCGAGccg-GGC-CuccaAGAGCGCCc -3'
miRNA:   3'- aGCGCUUuaaaCCGuGug--UCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 76578 0.72 0.884861
Target:  5'- aUUGCGGGAUggGGC-CGCAGAG-GCa -3'
miRNA:   3'- -AGCGCUUUAaaCCGuGUGUCUCgCGg -5'
28880 3' -50.7 NC_006146.1 + 53358 0.71 0.911459
Target:  5'- gCGUGAGGUcUUGGCugGCccGGCGCUu -3'
miRNA:   3'- aGCGCUUUA-AACCGugUGucUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.