miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28880 3' -50.7 NC_006146.1 + 69364 0.68 0.978407
Target:  5'- uUUGUGGAGguagacGaGCugGCAGAaGCGCCg -3'
miRNA:   3'- -AGCGCUUUaaa---C-CGugUGUCU-CGCGG- -5'
28880 3' -50.7 NC_006146.1 + 56501 0.69 0.975935
Target:  5'- gCGCGcAGUcgGGC-CGCGGGGuCGUCg -3'
miRNA:   3'- aGCGCuUUAaaCCGuGUGUCUC-GCGG- -5'
28880 3' -50.7 NC_006146.1 + 96255 0.71 0.934052
Target:  5'- -aGCGAcgAGUacgUGGCcuacuACAgGGGGCGCCg -3'
miRNA:   3'- agCGCU--UUAa--ACCG-----UGUgUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 76578 0.72 0.884861
Target:  5'- aUUGCGGGAUggGGC-CGCAGAG-GCa -3'
miRNA:   3'- -AGCGCUUUAaaCCGuGUGUCUCgCGg -5'
28880 3' -50.7 NC_006146.1 + 157830 0.67 0.990416
Target:  5'- cCGCGc----UGGCcccggaggggacggGCACcGAGCGCCg -3'
miRNA:   3'- aGCGCuuuaaACCG--------------UGUGuCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 27112 0.68 0.982781
Target:  5'- -aGCaacuAUUucUGGCAgCAuCAGAGCGCCa -3'
miRNA:   3'- agCGcuu-UAA--ACCGU-GU-GUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 48218 0.69 0.970379
Target:  5'- cUG-GAGGgccUGGCGCGCcuggguGAGCGCCg -3'
miRNA:   3'- aGCgCUUUaa-ACCGUGUGu-----CUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 34509 0.73 0.862408
Target:  5'- cCGCGAGAUUuggGGUAgGCGGAGCuUCa -3'
miRNA:   3'- aGCGCUUUAAa--CCGUgUGUCUCGcGG- -5'
28880 3' -50.7 NC_006146.1 + 24034 0.68 0.982781
Target:  5'- -aGCaacuAUUucUGGCAgCAuCAGAGCGCCa -3'
miRNA:   3'- agCGcuu-UAA--ACCGU-GU-GUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 38755 0.74 0.829421
Target:  5'- -gGCGugGUUgaUGGCACAUAGGGgGUCg -3'
miRNA:   3'- agCGCuuUAA--ACCGUGUGUCUCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 130048 0.69 0.973261
Target:  5'- cCGCGAGccg-GGC-CuccaAGAGCGCCc -3'
miRNA:   3'- aGCGCUUuaaaCCGuGug--UCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 147155 0.68 0.978407
Target:  5'- cCGCGGcAGUUgacccGGCggcgGCGCAGAccgGCGCCc -3'
miRNA:   3'- aGCGCU-UUAAa----CCG----UGUGUCU---CGCGG- -5'
28880 3' -50.7 NC_006146.1 + 98849 0.7 0.960412
Target:  5'- aCGgGAAGaaUGGCG-GCGGGGUGCCu -3'
miRNA:   3'- aGCgCUUUaaACCGUgUGUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 138340 0.71 0.934052
Target:  5'- cCGCGAGAUUUGGgguaGCGGAGCcUCa -3'
miRNA:   3'- aGCGCUUUAAACCgug-UGUCUCGcGG- -5'
28880 3' -50.7 NC_006146.1 + 155554 0.71 0.917487
Target:  5'- -gGCGuuGgagccgGGCucGCGCGGGGCGCCc -3'
miRNA:   3'- agCGCuuUaaa---CCG--UGUGUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 72294 0.72 0.891877
Target:  5'- cCGUGAcAUUUGGUGCAguGuuguucuccaguGGCGCCa -3'
miRNA:   3'- aGCGCUuUAAACCGUGUguC------------UCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 168432 0.67 0.991967
Target:  5'- -gGCGggGgagagGGgGCAgGGcuGGCGCCg -3'
miRNA:   3'- agCGCuuUaaa--CCgUGUgUC--UCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 44941 0.67 0.990793
Target:  5'- cUCGUGGccaggGGCGCGgGGAG-GCCc -3'
miRNA:   3'- -AGCGCUuuaaaCCGUGUgUCUCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 20952 0.67 0.989489
Target:  5'- -gGCccaGAAcuAUUucUGGCAgCAuCAGAGCGCCa -3'
miRNA:   3'- agCG---CUU--UAA--ACCGU-GU-GUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 159963 0.68 0.982781
Target:  5'- cUGUGGuagGAggUGGCGCGCAGgAGC-CCg -3'
miRNA:   3'- aGCGCU---UUaaACCGUGUGUC-UCGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.