miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28880 3' -50.7 NC_006146.1 + 50786 0.67 0.988045
Target:  5'- -gGUGGugug-GGCACACGG-GCGUCc -3'
miRNA:   3'- agCGCUuuaaaCCGUGUGUCuCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 64208 0.67 0.988928
Target:  5'- gUCGCGGAGcuccggcaggaGGCACAUcu-GCGCCu -3'
miRNA:   3'- -AGCGCUUUaaa--------CCGUGUGucuCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 158532 0.67 0.988045
Target:  5'- cCGUGAcucugGAggacgGGgACGCGGAGgGCCu -3'
miRNA:   3'- aGCGCU-----UUaaa--CCgUGUGUCUCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 155453 0.67 0.988045
Target:  5'- cCGUGAcucugGAggacgGGgACGCGGAGgGCCu -3'
miRNA:   3'- aGCGCU-----UUaaa--CCgUGUGUCUCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 152375 0.67 0.988045
Target:  5'- cCGUGAcucugGAggacgGGgACGCGGAGgGCCu -3'
miRNA:   3'- aGCGCU-----UUaaa--CCgUGUGUCUCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 149297 0.67 0.988045
Target:  5'- cCGUGAcucugGAggacgGGgACGCGGAGgGCCu -3'
miRNA:   3'- aGCGCU-----UUaaa--CCgUGUGUCUCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 146219 0.67 0.988045
Target:  5'- cCGUGAcucugGAggacgGGgACGCGGAGgGCCu -3'
miRNA:   3'- aGCGCU-----UUaaa--CCgUGUGUCUCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 143141 0.67 0.988045
Target:  5'- cCGUGAcucugGAggacgGGgACGCGGAGgGCCu -3'
miRNA:   3'- aGCGCU-----UUaaa--CCgUGUGUCUCgCGG- -5'
28880 3' -50.7 NC_006146.1 + 136796 0.67 0.988045
Target:  5'- cCGUGAAcgg-GGCGCGCuGGGuCGCg -3'
miRNA:   3'- aGCGCUUuaaaCCGUGUGuCUC-GCGg -5'
28880 3' -50.7 NC_006146.1 + 3793 0.67 0.991967
Target:  5'- -gGgGggGgggGGCACGCGGGGgaugGCCa -3'
miRNA:   3'- agCgCuuUaaaCCGUGUGUCUCg---CGG- -5'
28880 3' -50.7 NC_006146.1 + 125211 0.67 0.991967
Target:  5'- cUGCGAcg---GGCGCuCAGAGC-CCu -3'
miRNA:   3'- aGCGCUuuaaaCCGUGuGUCUCGcGG- -5'
28880 3' -50.7 NC_006146.1 + 43034 0.67 0.992715
Target:  5'- cCGCGAAcgUgccUGGCggauACGCcgccuggcgguugaGGGGUGCCa -3'
miRNA:   3'- aGCGCUUuaA---ACCG----UGUG--------------UCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 126450 0.66 0.996698
Target:  5'- gCGUGGGAUUccacgggaggcuaUGGCAC---GGGUGCCa -3'
miRNA:   3'- aGCGCUUUAA-------------ACCGUGuguCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 61297 0.66 0.996181
Target:  5'- gUCGCGu-GUUUgcGGCGCGCGGcGUccuGCCc -3'
miRNA:   3'- -AGCGCuuUAAA--CCGUGUGUCuCG---CGG- -5'
28880 3' -50.7 NC_006146.1 + 23329 0.66 0.99553
Target:  5'- gCGCGAGua-UGGCccuGCAGAccgaccucaGCGCCu -3'
miRNA:   3'- aGCGCUUuaaACCGug-UGUCU---------CGCGG- -5'
28880 3' -50.7 NC_006146.1 + 81646 0.66 0.994791
Target:  5'- cCGgGAcGUUggGGCuCGgAGGGUGCCg -3'
miRNA:   3'- aGCgCUuUAAa-CCGuGUgUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 14206 0.66 0.994791
Target:  5'- aCGgGGAGgcggUGGCGCGCAacgcGGGCcuucugGCCg -3'
miRNA:   3'- aGCgCUUUaa--ACCGUGUGU----CUCG------CGG- -5'
28880 3' -50.7 NC_006146.1 + 90041 0.66 0.993957
Target:  5'- -aGUGA----UGGCAcCGCGGGGUGCg -3'
miRNA:   3'- agCGCUuuaaACCGU-GUGUCUCGCGg -5'
28880 3' -50.7 NC_006146.1 + 43200 0.67 0.993018
Target:  5'- cUCGCGGGA---GGCGgggAUGGGGCGCUg -3'
miRNA:   3'- -AGCGCUUUaaaCCGUg--UGUCUCGCGG- -5'
28880 3' -50.7 NC_006146.1 + 165952 0.67 0.992918
Target:  5'- cUCGUGGccccUGGUccccgggGCACAGAGCacgGCCa -3'
miRNA:   3'- -AGCGCUuuaaACCG-------UGUGUCUCG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.