miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28880 5' -62.1 NC_006146.1 + 77918 0.66 0.706089
Target:  5'- -aGGGGcGGGC--GGCCuCGCAggugCCGg -3'
miRNA:   3'- ccCCCCaCCCGuaCCGGuGCGUa---GGC- -5'
28880 5' -62.1 NC_006146.1 + 137220 0.66 0.706089
Target:  5'- cGGGGaGGaagccGGGUGggGGCCugGgGUCCc -3'
miRNA:   3'- -CCCC-CCa----CCCGUa-CCGGugCgUAGGc -5'
28880 5' -62.1 NC_006146.1 + 34063 0.66 0.706089
Target:  5'- nGGGGGUcccGuGGCAcggGGCCGgGgGUCCc -3'
miRNA:   3'- cCCCCCA---C-CCGUa--CCGGUgCgUAGGc -5'
28880 5' -62.1 NC_006146.1 + 44702 0.66 0.686961
Target:  5'- uGGcGGcGGUGGcCGUGGCCccCGCuggCCGg -3'
miRNA:   3'- -CC-CC-CCACCcGUACCGGu-GCGua-GGC- -5'
28880 5' -62.1 NC_006146.1 + 128199 0.66 0.686961
Target:  5'- aGGGGGGcgccgcGGcGCcgGGCCagACGCucuUUCGg -3'
miRNA:   3'- -CCCCCCa-----CC-CGuaCCGG--UGCGu--AGGC- -5'
28880 5' -62.1 NC_006146.1 + 19288 0.66 0.677332
Target:  5'- cGGGucucGGUGGaGCG-GGUCACGCG-CCGc -3'
miRNA:   3'- -CCCc---CCACC-CGUaCCGGUGCGUaGGC- -5'
28880 5' -62.1 NC_006146.1 + 133079 0.66 0.677332
Target:  5'- cGGGuGG-GGGgGUGGUCcCGC-UCCGa -3'
miRNA:   3'- cCCC-CCaCCCgUACCGGuGCGuAGGC- -5'
28880 5' -62.1 NC_006146.1 + 128752 0.66 0.666702
Target:  5'- aGGGGGUGuccgaGGCcuucuucuggaguGUGGCCA-GCAgggCCGa -3'
miRNA:   3'- cCCCCCAC-----CCG-------------UACCGGUgCGUa--GGC- -5'
28880 5' -62.1 NC_006146.1 + 141215 0.66 0.657981
Target:  5'- uGGGGGGaacUGGGCAgUGGaCACGgGgCUGa -3'
miRNA:   3'- -CCCCCC---ACCCGU-ACCgGUGCgUaGGC- -5'
28880 5' -62.1 NC_006146.1 + 144293 0.66 0.657981
Target:  5'- uGGGGGGaacUGGGCAgUGGaCACGgGgCUGa -3'
miRNA:   3'- -CCCCCC---ACCCGU-ACCgGUGCgUaGGC- -5'
28880 5' -62.1 NC_006146.1 + 147371 0.66 0.657981
Target:  5'- uGGGGGGaacUGGGCAgUGGaCACGgGgCUGa -3'
miRNA:   3'- -CCCCCC---ACCCGU-ACCgGUGCgUaGGC- -5'
28880 5' -62.1 NC_006146.1 + 298 0.66 0.657981
Target:  5'- cGGGGGcGGGCccGGC-GCGCucgCCa -3'
miRNA:   3'- cCCCCCaCCCGuaCCGgUGCGua-GGc -5'
28880 5' -62.1 NC_006146.1 + 156605 0.66 0.657981
Target:  5'- uGGGGGGaacUGGGCAgUGGaCACGgGgCUGa -3'
miRNA:   3'- -CCCCCC---ACCCGU-ACCgGUGCgUaGGC- -5'
28880 5' -62.1 NC_006146.1 + 153527 0.66 0.657981
Target:  5'- uGGGGGGaacUGGGCAgUGGaCACGgGgCUGa -3'
miRNA:   3'- -CCCCCC---ACCCGU-ACCgGUGCgUaGGC- -5'
28880 5' -62.1 NC_006146.1 + 150449 0.66 0.657981
Target:  5'- uGGGGGGaacUGGGCAgUGGaCACGgGgCUGa -3'
miRNA:   3'- -CCCCCC---ACCCGU-ACCgGUGCgUaGGC- -5'
28880 5' -62.1 NC_006146.1 + 55834 0.66 0.648273
Target:  5'- --uGGGUGGGCAcccGGCCACcaGCAacaCCGa -3'
miRNA:   3'- cccCCCACCCGUa--CCGGUG--CGUa--GGC- -5'
28880 5' -62.1 NC_006146.1 + 95743 0.66 0.648273
Target:  5'- uGGGGG-GGGCugguguUGGCCcCGguUuuGg -3'
miRNA:   3'- cCCCCCaCCCGu-----ACCGGuGCguAggC- -5'
28880 5' -62.1 NC_006146.1 + 3247 0.66 0.644387
Target:  5'- aGGGGGGgauaggggaccugGGGaCGgcgcaGGCCACGag-CCGg -3'
miRNA:   3'- -CCCCCCa------------CCC-GUa----CCGGUGCguaGGC- -5'
28880 5' -62.1 NC_006146.1 + 6960 0.67 0.638554
Target:  5'- aGGGGGUGGaGUAUGG-CAUGCGa--- -3'
miRNA:   3'- cCCCCCACC-CGUACCgGUGCGUaggc -5'
28880 5' -62.1 NC_006146.1 + 167097 0.67 0.638554
Target:  5'- --aGGG-GGGCGUGGCCAuccccCGCGUgCCc -3'
miRNA:   3'- cccCCCaCCCGUACCGGU-----GCGUA-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.