Results 1 - 20 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28880 | 5' | -62.1 | NC_006146.1 | + | 30143 | 1.1 | 0.000788 |
Target: 5'- aGGGGGGUGGGCAUGGCCACGCAUCCGa -3' miRNA: 3'- -CCCCCCACCCGUACCGGUGCGUAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 3792 | 0.79 | 0.134044 |
Target: 5'- gGGGGGGgggGGGCAcgcgggggaUGGCCACGCccCCc -3' miRNA: 3'- -CCCCCCa--CCCGU---------ACCGGUGCGuaGGc -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 136343 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 135785 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 135600 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 136064 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 135507 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 135878 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 135971 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 135414 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 136157 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 135321 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 33597 | 0.78 | 0.1552 |
Target: 5'- cGGuuuGGGUGGGCGUGGuCCGCGgGUUCGg -3' miRNA: 3'- -CCc--CCCACCCGUACC-GGUGCgUAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 33156 | 0.78 | 0.1552 |
Target: 5'- uGGGGGGUggcccggcuGGGCAccGCCGCGCcgCCGc -3' miRNA: 3'- -CCCCCCA---------CCCGUacCGGUGCGuaGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 135228 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 135135 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 136436 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 136529 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 136250 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 135693 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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