Results 21 - 40 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28880 | 5' | -62.1 | NC_006146.1 | + | 137365 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 33597 | 0.78 | 0.1552 |
Target: 5'- cGGuuuGGGUGGGCGUGGuCCGCGgGUUCGg -3' miRNA: 3'- -CCc--CCCACCCGUACC-GGUGCgUAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 135135 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 33156 | 0.78 | 0.1552 |
Target: 5'- uGGGGGGUggcccggcuGGGCAccGCCGCGCcgCCGc -3' miRNA: 3'- -CCCCCCA---------CCCGUacCGGUGCGuaGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 135228 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 135321 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 135414 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 135600 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 135507 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 135693 | 0.78 | 0.1552 |
Target: 5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3' miRNA: 3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 64247 | 0.76 | 0.192612 |
Target: 5'- cGGGGcGGgagGGGCGUGGCU-CGC-UCCGa -3' miRNA: 3'- -CCCC-CCa--CCCGUACCGGuGCGuAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 33952 | 0.75 | 0.22176 |
Target: 5'- uGGGuccgcugguccGGGUGGGCGUGGuCCGCuGgGUCCGc -3' miRNA: 3'- -CCC-----------CCCACCCGUACC-GGUG-CgUAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 73559 | 0.74 | 0.266377 |
Target: 5'- cGGGcGGGUGGuuGUGGCCggACGcCAUCCu -3' miRNA: 3'- -CCC-CCCACCcgUACCGG--UGC-GUAGGc -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 168376 | 0.73 | 0.284893 |
Target: 5'- cGGGGGGUcGGGCG-GGC-AUGC-UCCGg -3' miRNA: 3'- -CCCCCCA-CCCGUaCCGgUGCGuAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 169308 | 0.73 | 0.284893 |
Target: 5'- cGGGGGGUcGGGCG-GGC-AUGC-UCCGg -3' miRNA: 3'- -CCCCCCA-CCCGUaCCGgUGCGuAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 170239 | 0.73 | 0.284893 |
Target: 5'- cGGGGGGUcGGGCG-GGC-AUGC-UCCGg -3' miRNA: 3'- -CCCCCCA-CCCGUaCCGgUGCGuAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 167444 | 0.73 | 0.284893 |
Target: 5'- cGGGGGGUcGGGCG-GGC-AUGC-UCCGg -3' miRNA: 3'- -CCCCCCA-CCCGUaCCGgUGCGuAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 41712 | 0.73 | 0.291287 |
Target: 5'- cGGGGGGUGcGGCgcuGUGGCCuuuUGCAacgCCu -3' miRNA: 3'- -CCCCCCAC-CCG---UACCGGu--GCGUa--GGc -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 33766 | 0.73 | 0.30441 |
Target: 5'- uGGGuccgcugguccGGGUGGGCGUGGUCcgAUGgGUCCGc -3' miRNA: 3'- -CCC-----------CCCACCCGUACCGG--UGCgUAGGC- -5' |
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28880 | 5' | -62.1 | NC_006146.1 | + | 33280 | 0.73 | 0.30441 |
Target: 5'- uGGGGGGUggcccggcuGGGCAccGCUGCGCcgCCGc -3' miRNA: 3'- -CCCCCCA---------CCCGUacCGGUGCGuaGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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