miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28880 5' -62.1 NC_006146.1 + 51554 0.67 0.638554
Target:  5'- gGGGauuacuggagauGGGUGGGgA-GGCgGCGCggCCGa -3'
miRNA:   3'- -CCC------------CCCACCCgUaCCGgUGCGuaGGC- -5'
28880 5' -62.1 NC_006146.1 + 6960 0.67 0.638554
Target:  5'- aGGGGGUGGaGUAUGG-CAUGCGa--- -3'
miRNA:   3'- cCCCCCACC-CGUACCgGUGCGUaggc -5'
28880 5' -62.1 NC_006146.1 + 55170 0.67 0.628831
Target:  5'- aGGGGGGUGaccgcgucccaGGCugcGGCCGCgGCGggCGa -3'
miRNA:   3'- -CCCCCCAC-----------CCGua-CCGGUG-CGUagGC- -5'
28880 5' -62.1 NC_006146.1 + 167319 0.67 0.613281
Target:  5'- aGGGGGGgccggcgGGGCGUcccgucgucacgcucGGCUgcacGCGCGgcggcgCCGg -3'
miRNA:   3'- -CCCCCCa------CCCGUA---------------CCGG----UGCGUa-----GGC- -5'
28880 5' -62.1 NC_006146.1 + 168251 0.67 0.613281
Target:  5'- aGGGGGGgccggcgGGGCGUcccgucgucacgcucGGCUgcacGCGCGgcggcgCCGg -3'
miRNA:   3'- -CCCCCCa------CCCGUA---------------CCGG----UGCGUa-----GGC- -5'
28880 5' -62.1 NC_006146.1 + 169183 0.67 0.613281
Target:  5'- aGGGGGGgccggcgGGGCGUcccgucgucacgcucGGCUgcacGCGCGgcggcgCCGg -3'
miRNA:   3'- -CCCCCCa------CCCGUA---------------CCGG----UGCGUa-----GGC- -5'
28880 5' -62.1 NC_006146.1 + 170114 0.67 0.613281
Target:  5'- aGGGGGGgccggcgGGGCGUcccgucgucacgcucGGCUgcacGCGCGgcggcgCCGg -3'
miRNA:   3'- -CCCCCCa------CCCGUA---------------CCGG----UGCGUa-----GGC- -5'
28880 5' -62.1 NC_006146.1 + 31615 0.67 0.609397
Target:  5'- cGGGGGaUGGGCucaaGGCCGgGCccUCUGc -3'
miRNA:   3'- cCCCCC-ACCCGua--CCGGUgCGu-AGGC- -5'
28880 5' -62.1 NC_006146.1 + 150675 0.67 0.609397
Target:  5'- gGGaGGGGUGGGgaGUGGCCAgGgGgaCGg -3'
miRNA:   3'- -CC-CCCCACCCg-UACCGGUgCgUagGC- -5'
28880 5' -62.1 NC_006146.1 + 6992 0.67 0.609397
Target:  5'- aGGGGGGUGGuGUgcgGGUuCAUcCGUCCGu -3'
miRNA:   3'- -CCCCCCACC-CGua-CCG-GUGcGUAGGC- -5'
28880 5' -62.1 NC_006146.1 + 110894 0.67 0.5997
Target:  5'- aGGcGGGGacgGGGCcgcguUGGCCuuGCAcUCCa -3'
miRNA:   3'- -CC-CCCCa--CCCGu----ACCGGugCGU-AGGc -5'
28880 5' -62.1 NC_006146.1 + 94963 0.67 0.5997
Target:  5'- aGGGGGGUGuGCA--GCCAgGCAUUa- -3'
miRNA:   3'- -CCCCCCACcCGUacCGGUgCGUAGgc -5'
28880 5' -62.1 NC_006146.1 + 92233 0.67 0.5997
Target:  5'- uGGGGGGcGGGCccGGCC-UGUggCUGc -3'
miRNA:   3'- -CCCCCCaCCCGuaCCGGuGCGuaGGC- -5'
28880 5' -62.1 NC_006146.1 + 169251 0.67 0.590025
Target:  5'- aGGGGGcucccgaGGGCGgggccggGGCCugGCGggggCCa -3'
miRNA:   3'- cCCCCCa------CCCGUa------CCGGugCGUa---GGc -5'
28880 5' -62.1 NC_006146.1 + 167387 0.67 0.590025
Target:  5'- aGGGGGcucccgaGGGCGgggccggGGCCugGCGggggCCa -3'
miRNA:   3'- cCCCCCa------CCCGUa------CCGGugCGUa---GGc -5'
28880 5' -62.1 NC_006146.1 + 168319 0.67 0.590025
Target:  5'- aGGGGGcucccgaGGGCGgggccggGGCCugGCGggggCCa -3'
miRNA:   3'- cCCCCCa------CCCGUa------CCGGugCGUa---GGc -5'
28880 5' -62.1 NC_006146.1 + 170182 0.67 0.590025
Target:  5'- aGGGGGcucccgaGGGCGgggccggGGCCugGCGggggCCa -3'
miRNA:   3'- cCCCCCa------CCCGUa------CCGGugCGUa---GGc -5'
28880 5' -62.1 NC_006146.1 + 1209 0.68 0.581341
Target:  5'- aGGGGGaGcccgggaagacccggGGGCG-GGCCACGCGcgcCCGc -3'
miRNA:   3'- -CCCCC-Ca--------------CCCGUaCCGGUGCGUa--GGC- -5'
28880 5' -62.1 NC_006146.1 + 3073 0.68 0.581341
Target:  5'- aGGGGGaGcccgggaagacccggGGGCG-GGCCACGCGcgcCCGc -3'
miRNA:   3'- -CCCCC-Ca--------------CCCGUaCCGGUGCGUa--GGC- -5'
28880 5' -62.1 NC_006146.1 + 2141 0.68 0.581341
Target:  5'- aGGGGGaGcccgggaagacccggGGGCG-GGCCACGCGcgcCCGc -3'
miRNA:   3'- -CCCCC-Ca--------------CCCGUaCCGGUGCGUa--GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.