miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28880 5' -62.1 NC_006146.1 + 298 0.66 0.657981
Target:  5'- cGGGGGcGGGCccGGC-GCGCucgCCa -3'
miRNA:   3'- cCCCCCaCCCGuaCCGgUGCGua-GGc -5'
28880 5' -62.1 NC_006146.1 + 1209 0.68 0.581341
Target:  5'- aGGGGGaGcccgggaagacccggGGGCG-GGCCACGCGcgcCCGc -3'
miRNA:   3'- -CCCCC-Ca--------------CCCGUaCCGGUGCGUa--GGC- -5'
28880 5' -62.1 NC_006146.1 + 2141 0.68 0.581341
Target:  5'- aGGGGGaGcccgggaagacccggGGGCG-GGCCACGCGcgcCCGc -3'
miRNA:   3'- -CCCCC-Ca--------------CCCGUaCCGGUGCGUa--GGC- -5'
28880 5' -62.1 NC_006146.1 + 3073 0.68 0.581341
Target:  5'- aGGGGGaGcccgggaagacccggGGGCG-GGCCACGCGcgcCCGc -3'
miRNA:   3'- -CCCCC-Ca--------------CCCGUaCCGGUGCGUa--GGC- -5'
28880 5' -62.1 NC_006146.1 + 3247 0.66 0.644387
Target:  5'- aGGGGGGgauaggggaccugGGGaCGgcgcaGGCCACGag-CCGg -3'
miRNA:   3'- -CCCCCCa------------CCC-GUa----CCGGUGCguaGGC- -5'
28880 5' -62.1 NC_006146.1 + 3792 0.79 0.134044
Target:  5'- gGGGGGGgggGGGCAcgcgggggaUGGCCACGCccCCc -3'
miRNA:   3'- -CCCCCCa--CCCGU---------ACCGGUGCGuaGGc -5'
28880 5' -62.1 NC_006146.1 + 6960 0.67 0.638554
Target:  5'- aGGGGGUGGaGUAUGG-CAUGCGa--- -3'
miRNA:   3'- cCCCCCACC-CGUACCgGUGCGUaggc -5'
28880 5' -62.1 NC_006146.1 + 6992 0.67 0.609397
Target:  5'- aGGGGGGUGGuGUgcgGGUuCAUcCGUCCGu -3'
miRNA:   3'- -CCCCCCACC-CGua-CCG-GUGcGUAGGC- -5'
28880 5' -62.1 NC_006146.1 + 10895 0.7 0.433863
Target:  5'- cGGGGcGGUGGGCaAUGcGCCAC-CA-CUGa -3'
miRNA:   3'- -CCCC-CCACCCG-UAC-CGGUGcGUaGGC- -5'
28880 5' -62.1 NC_006146.1 + 15500 0.68 0.570763
Target:  5'- uGGGGGGacgugguguacUGGGagAUGGCCugccuGCGCAaCCa -3'
miRNA:   3'- -CCCCCC-----------ACCCg-UACCGG-----UGCGUaGGc -5'
28880 5' -62.1 NC_006146.1 + 19288 0.66 0.677332
Target:  5'- cGGGucucGGUGGaGCG-GGUCACGCG-CCGc -3'
miRNA:   3'- -CCCc---CCACC-CGUaCCGGUGCGUaGGC- -5'
28880 5' -62.1 NC_006146.1 + 30143 1.1 0.000788
Target:  5'- aGGGGGGUGGGCAUGGCCACGCAUCCGa -3'
miRNA:   3'- -CCCCCCACCCGUACCGGUGCGUAGGC- -5'
28880 5' -62.1 NC_006146.1 + 31615 0.67 0.609397
Target:  5'- cGGGGGaUGGGCucaaGGCCGgGCccUCUGc -3'
miRNA:   3'- cCCCCC-ACCCGua--CCGGUgCGu-AGGC- -5'
28880 5' -62.1 NC_006146.1 + 33156 0.78 0.1552
Target:  5'- uGGGGGGUggcccggcuGGGCAccGCCGCGCcgCCGc -3'
miRNA:   3'- -CCCCCCA---------CCCGUacCGGUGCGuaGGC- -5'
28880 5' -62.1 NC_006146.1 + 33280 0.73 0.30441
Target:  5'- uGGGGGGUggcccggcuGGGCAccGCUGCGCcgCCGc -3'
miRNA:   3'- -CCCCCCA---------CCCGUacCGGUGCGuaGGC- -5'
28880 5' -62.1 NC_006146.1 + 33402 0.73 0.30441
Target:  5'- uGGGGGGUggcccgccuGGGCAccGCUGCGCcgCCGc -3'
miRNA:   3'- -CCCCCCA---------CCCGUacCGGUGCGuaGGC- -5'
28880 5' -62.1 NC_006146.1 + 33597 0.78 0.1552
Target:  5'- cGGuuuGGGUGGGCGUGGuCCGCGgGUUCGg -3'
miRNA:   3'- -CCc--CCCACCCGUACC-GGUGCgUAGGC- -5'
28880 5' -62.1 NC_006146.1 + 33766 0.73 0.30441
Target:  5'- uGGGuccgcugguccGGGUGGGCGUGGUCcgAUGgGUCCGc -3'
miRNA:   3'- -CCC-----------CCCACCCGUACCGG--UGCgUAGGC- -5'
28880 5' -62.1 NC_006146.1 + 33952 0.75 0.22176
Target:  5'- uGGGuccgcugguccGGGUGGGCGUGGuCCGCuGgGUCCGc -3'
miRNA:   3'- -CCC-----------CCCACCCGUACC-GGUG-CgUAGGC- -5'
28880 5' -62.1 NC_006146.1 + 34018 0.69 0.47759
Target:  5'- gGGGGGGUcggggcaggcGGGCGUGGUCccggggccuAUGCcggCCGg -3'
miRNA:   3'- -CCCCCCA----------CCCGUACCGG---------UGCGua-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.