miRNA display CGI


Results 21 - 40 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28880 5' -62.1 NC_006146.1 + 34063 0.66 0.706089
Target:  5'- nGGGGGUcccGuGGCAcggGGCCGgGgGUCCc -3'
miRNA:   3'- cCCCCCA---C-CCGUa--CCGGUgCgUAGGc -5'
28880 5' -62.1 NC_006146.1 + 41712 0.73 0.291287
Target:  5'- cGGGGGGUGcGGCgcuGUGGCCuuuUGCAacgCCu -3'
miRNA:   3'- -CCCCCCAC-CCG---UACCGGu--GCGUa--GGc -5'
28880 5' -62.1 NC_006146.1 + 44388 0.7 0.433863
Target:  5'- cGGGGGGcgugugGGGCcgGGCacgGCGCcuUCCu -3'
miRNA:   3'- -CCCCCCa-----CCCGuaCCGg--UGCGu-AGGc -5'
28880 5' -62.1 NC_006146.1 + 44702 0.66 0.686961
Target:  5'- uGGcGGcGGUGGcCGUGGCCccCGCuggCCGg -3'
miRNA:   3'- -CC-CC-CCACCcGUACCGGu-GCGua-GGC- -5'
28880 5' -62.1 NC_006146.1 + 45529 0.69 0.504845
Target:  5'- uGGGGGccugggccuccuUGGGCuUGGCCGCccugGCcUCCGc -3'
miRNA:   3'- cCCCCC------------ACCCGuACCGGUG----CGuAGGC- -5'
28880 5' -62.1 NC_006146.1 + 48322 0.67 0.638554
Target:  5'- cGGaGGUGcuGGCGguggugGGCCAgGCGUCCa -3'
miRNA:   3'- cCCcCCAC--CCGUa-----CCGGUgCGUAGGc -5'
28880 5' -62.1 NC_006146.1 + 49533 0.7 0.433863
Target:  5'- cGGGGGcuccucuggGGGCGgaGGCCACGCcggCCa -3'
miRNA:   3'- cCCCCCa--------CCCGUa-CCGGUGCGua-GGc -5'
28880 5' -62.1 NC_006146.1 + 49671 0.7 0.433863
Target:  5'- cGGGcaGGG-GGGCuAUGGCgGCGuCGUCCu -3'
miRNA:   3'- -CCC--CCCaCCCG-UACCGgUGC-GUAGGc -5'
28880 5' -62.1 NC_006146.1 + 51186 0.68 0.580377
Target:  5'- aGGGGGUcugcGGGCuggcGUGGUacaGgGCAUCCa -3'
miRNA:   3'- cCCCCCA----CCCG----UACCGg--UgCGUAGGc -5'
28880 5' -62.1 NC_006146.1 + 51554 0.67 0.638554
Target:  5'- gGGGauuacuggagauGGGUGGGgA-GGCgGCGCggCCGa -3'
miRNA:   3'- -CCC------------CCCACCCgUaCCGgUGCGuaGGC- -5'
28880 5' -62.1 NC_006146.1 + 51680 0.68 0.551658
Target:  5'- aGGGGGGcgacgGGGCGggGGCUGauCGUCCu -3'
miRNA:   3'- -CCCCCCa----CCCGUa-CCGGUgcGUAGGc -5'
28880 5' -62.1 NC_006146.1 + 51844 0.71 0.417033
Target:  5'- aGGGGGGcucgGGGCcUGGCC-CGagcCCGg -3'
miRNA:   3'- -CCCCCCa---CCCGuACCGGuGCguaGGC- -5'
28880 5' -62.1 NC_006146.1 + 53497 0.72 0.361397
Target:  5'- cGGGGGUGcggucuggcucuGGCugcgGGCCGCGCGUgUGa -3'
miRNA:   3'- cCCCCCAC------------CCGua--CCGGUGCGUAgGC- -5'
28880 5' -62.1 NC_006146.1 + 54053 0.68 0.580377
Target:  5'- cGGcGGuGGUcaGGGCccaccUGGCCGcCGCGUCCc -3'
miRNA:   3'- -CC-CC-CCA--CCCGu----ACCGGU-GCGUAGGc -5'
28880 5' -62.1 NC_006146.1 + 55170 0.67 0.628831
Target:  5'- aGGGGGGUGaccgcgucccaGGCugcGGCCGCgGCGggCGa -3'
miRNA:   3'- -CCCCCCAC-----------CCGua-CCGGUG-CGUagGC- -5'
28880 5' -62.1 NC_006146.1 + 55834 0.66 0.648273
Target:  5'- --uGGGUGGGCAcccGGCCACcaGCAacaCCGa -3'
miRNA:   3'- cccCCCACCCGUa--CCGGUG--CGUa--GGC- -5'
28880 5' -62.1 NC_006146.1 + 57378 0.68 0.53275
Target:  5'- cGGuGGcgccGGUGGGC-UGGCCcCGCGaCCGu -3'
miRNA:   3'- -CC-CC----CCACCCGuACCGGuGCGUaGGC- -5'
28880 5' -62.1 NC_006146.1 + 64247 0.76 0.192612
Target:  5'- cGGGGcGGgagGGGCGUGGCU-CGC-UCCGa -3'
miRNA:   3'- -CCCC-CCa--CCCGUACCGGuGCGuAGGC- -5'
28880 5' -62.1 NC_006146.1 + 67000 0.68 0.570763
Target:  5'- -uGGGGUGuaggagauGGCccggGUGaGCCGCGUGUCCGg -3'
miRNA:   3'- ccCCCCAC--------CCG----UAC-CGGUGCGUAGGC- -5'
28880 5' -62.1 NC_006146.1 + 69540 0.71 0.369022
Target:  5'- uGGGGGGUggGGGCAUugacagGGUCACGgagacCGUCUGg -3'
miRNA:   3'- -CCCCCCA--CCCGUA------CCGGUGC-----GUAGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.