miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28880 5' -62.1 NC_006146.1 + 170423 0.71 0.417033
Target:  5'- aGGGGGG-GGucccGCggGGCCcgGCGCGUgCCGg -3'
miRNA:   3'- -CCCCCCaCC----CGuaCCGG--UGCGUA-GGC- -5'
28880 5' -62.1 NC_006146.1 + 170297 0.73 0.309786
Target:  5'- cGGGGGagaggGGGCAgggcuggcgccgGGCCGCGCccCCGg -3'
miRNA:   3'- cCCCCCa----CCCGUa-----------CCGGUGCGuaGGC- -5'
28880 5' -62.1 NC_006146.1 + 170239 0.73 0.284893
Target:  5'- cGGGGGGUcGGGCG-GGC-AUGC-UCCGg -3'
miRNA:   3'- -CCCCCCA-CCCGUaCCGgUGCGuAGGC- -5'
28880 5' -62.1 NC_006146.1 + 170182 0.67 0.590025
Target:  5'- aGGGGGcucccgaGGGCGgggccggGGCCugGCGggggCCa -3'
miRNA:   3'- cCCCCCa------CCCGUa------CCGGugCGUa---GGc -5'
28880 5' -62.1 NC_006146.1 + 170114 0.67 0.613281
Target:  5'- aGGGGGGgccggcgGGGCGUcccgucgucacgcucGGCUgcacGCGCGgcggcgCCGg -3'
miRNA:   3'- -CCCCCCa------CCCGUA---------------CCGG----UGCGUa-----GGC- -5'
28880 5' -62.1 NC_006146.1 + 170059 0.7 0.468666
Target:  5'- -cGGGGaGGGCccggGGCCGCGCGUggggauggCCGg -3'
miRNA:   3'- ccCCCCaCCCGua--CCGGUGCGUA--------GGC- -5'
28880 5' -62.1 NC_006146.1 + 169648 0.7 0.45108
Target:  5'- uGGcGGGGagaauacagcUGGGCGUGGCgggCGCGCGUggcCCGc -3'
miRNA:   3'- -CC-CCCC----------ACCCGUACCG---GUGCGUA---GGC- -5'
28880 5' -62.1 NC_006146.1 + 169492 0.71 0.417033
Target:  5'- aGGGGGG-GGucccGCggGGCCcgGCGCGUgCCGg -3'
miRNA:   3'- -CCCCCCaCC----CGuaCCGG--UGCGUA-GGC- -5'
28880 5' -62.1 NC_006146.1 + 169366 0.73 0.309786
Target:  5'- cGGGGGagaggGGGCAgggcuggcgccgGGCCGCGCccCCGg -3'
miRNA:   3'- cCCCCCa----CCCGUa-----------CCGGUGCGuaGGC- -5'
28880 5' -62.1 NC_006146.1 + 169308 0.73 0.284893
Target:  5'- cGGGGGGUcGGGCG-GGC-AUGC-UCCGg -3'
miRNA:   3'- -CCCCCCA-CCCGUaCCGgUGCGuAGGC- -5'
28880 5' -62.1 NC_006146.1 + 169251 0.67 0.590025
Target:  5'- aGGGGGcucccgaGGGCGgggccggGGCCugGCGggggCCa -3'
miRNA:   3'- cCCCCCa------CCCGUa------CCGGugCGUa---GGc -5'
28880 5' -62.1 NC_006146.1 + 169183 0.67 0.613281
Target:  5'- aGGGGGGgccggcgGGGCGUcccgucgucacgcucGGCUgcacGCGCGgcggcgCCGg -3'
miRNA:   3'- -CCCCCCa------CCCGUA---------------CCGG----UGCGUa-----GGC- -5'
28880 5' -62.1 NC_006146.1 + 169127 0.7 0.468666
Target:  5'- -cGGGGaGGGCccggGGCCGCGCGUggggauggCCGg -3'
miRNA:   3'- ccCCCCaCCCGua--CCGGUGCGUA--------GGC- -5'
28880 5' -62.1 NC_006146.1 + 168715 0.7 0.459828
Target:  5'- uGGcGGGGagaaugacagcUGGGCGUGGCgggCGCGCGUggcCCGc -3'
miRNA:   3'- -CC-CCCC-----------ACCCGUACCG---GUGCGUA---GGC- -5'
28880 5' -62.1 NC_006146.1 + 168560 0.71 0.417033
Target:  5'- aGGGGGG-GGucccGCggGGCCcgGCGCGUgCCGg -3'
miRNA:   3'- -CCCCCCaCC----CGuaCCGG--UGCGUA-GGC- -5'
28880 5' -62.1 NC_006146.1 + 168434 0.73 0.309786
Target:  5'- cGGGGGagaggGGGCAgggcuggcgccgGGCCGCGCccCCGg -3'
miRNA:   3'- cCCCCCa----CCCGUa-----------CCGGUGCGuaGGC- -5'
28880 5' -62.1 NC_006146.1 + 168376 0.73 0.284893
Target:  5'- cGGGGGGUcGGGCG-GGC-AUGC-UCCGg -3'
miRNA:   3'- -CCCCCCA-CCCGUaCCGgUGCGuAGGC- -5'
28880 5' -62.1 NC_006146.1 + 168319 0.67 0.590025
Target:  5'- aGGGGGcucccgaGGGCGgggccggGGCCugGCGggggCCa -3'
miRNA:   3'- cCCCCCa------CCCGUa------CCGGugCGUa---GGc -5'
28880 5' -62.1 NC_006146.1 + 168251 0.67 0.613281
Target:  5'- aGGGGGGgccggcgGGGCGUcccgucgucacgcucGGCUgcacGCGCGgcggcgCCGg -3'
miRNA:   3'- -CCCCCCa------CCCGUA---------------CCGG----UGCGUa-----GGC- -5'
28880 5' -62.1 NC_006146.1 + 168195 0.7 0.468666
Target:  5'- -cGGGGaGGGCccggGGCCGCGCGUggggauggCCGg -3'
miRNA:   3'- ccCCCCaCCCGua--CCGGUGCGUA--------GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.