miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28880 5' -62.1 NC_006146.1 + 33156 0.78 0.1552
Target:  5'- uGGGGGGUggcccggcuGGGCAccGCCGCGCcgCCGc -3'
miRNA:   3'- -CCCCCCA---------CCCGUacCGGUGCGuaGGC- -5'
28880 5' -62.1 NC_006146.1 + 136529 0.78 0.1552
Target:  5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3'
miRNA:   3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5'
28880 5' -62.1 NC_006146.1 + 136807 0.78 0.1552
Target:  5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3'
miRNA:   3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5'
28880 5' -62.1 NC_006146.1 + 34063 0.66 0.706089
Target:  5'- nGGGGGUcccGuGGCAcggGGCCGgGgGUCCc -3'
miRNA:   3'- cCCCCCA---C-CCGUa--CCGGUgCgUAGGc -5'
28880 5' -62.1 NC_006146.1 + 135321 0.78 0.1552
Target:  5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3'
miRNA:   3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5'
28880 5' -62.1 NC_006146.1 + 135414 0.78 0.1552
Target:  5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3'
miRNA:   3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5'
28880 5' -62.1 NC_006146.1 + 135600 0.78 0.1552
Target:  5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3'
miRNA:   3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5'
28880 5' -62.1 NC_006146.1 + 135693 0.78 0.1552
Target:  5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3'
miRNA:   3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5'
28880 5' -62.1 NC_006146.1 + 135971 0.78 0.1552
Target:  5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3'
miRNA:   3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5'
28880 5' -62.1 NC_006146.1 + 136436 0.78 0.1552
Target:  5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3'
miRNA:   3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5'
28880 5' -62.1 NC_006146.1 + 136157 0.78 0.1552
Target:  5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3'
miRNA:   3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5'
28880 5' -62.1 NC_006146.1 + 135878 0.78 0.1552
Target:  5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3'
miRNA:   3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5'
28880 5' -62.1 NC_006146.1 + 33597 0.78 0.1552
Target:  5'- cGGuuuGGGUGGGCGUGGuCCGCGgGUUCGg -3'
miRNA:   3'- -CCc--CCCACCCGUACC-GGUGCgUAGGC- -5'
28880 5' -62.1 NC_006146.1 + 136250 0.78 0.1552
Target:  5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3'
miRNA:   3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5'
28880 5' -62.1 NC_006146.1 + 135135 0.78 0.1552
Target:  5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3'
miRNA:   3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5'
28880 5' -62.1 NC_006146.1 + 135785 0.78 0.1552
Target:  5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3'
miRNA:   3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5'
28880 5' -62.1 NC_006146.1 + 136343 0.78 0.1552
Target:  5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3'
miRNA:   3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5'
28880 5' -62.1 NC_006146.1 + 136622 0.78 0.1552
Target:  5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3'
miRNA:   3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5'
28880 5' -62.1 NC_006146.1 + 135228 0.78 0.1552
Target:  5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3'
miRNA:   3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5'
28880 5' -62.1 NC_006146.1 + 135507 0.78 0.1552
Target:  5'- cGGGGGGU-GGCcgGGCCGCuGCcggGUCCGc -3'
miRNA:   3'- -CCCCCCAcCCGuaCCGGUG-CG---UAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.