miRNA display CGI


Results 1 - 20 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28880 5' -62.1 NC_006146.1 + 1209 0.68 0.581341
Target:  5'- aGGGGGaGcccgggaagacccggGGGCG-GGCCACGCGcgcCCGc -3'
miRNA:   3'- -CCCCC-Ca--------------CCCGUaCCGGUGCGUa--GGC- -5'
28880 5' -62.1 NC_006146.1 + 55834 0.66 0.648273
Target:  5'- --uGGGUGGGCAcccGGCCACcaGCAacaCCGa -3'
miRNA:   3'- cccCCCACCCGUa--CCGGUG--CGUa--GGC- -5'
28880 5' -62.1 NC_006146.1 + 6960 0.67 0.638554
Target:  5'- aGGGGGUGGaGUAUGG-CAUGCGa--- -3'
miRNA:   3'- cCCCCCACC-CGUACCgGUGCGUaggc -5'
28880 5' -62.1 NC_006146.1 + 31615 0.67 0.609397
Target:  5'- cGGGGGaUGGGCucaaGGCCGgGCccUCUGc -3'
miRNA:   3'- cCCCCC-ACCCGua--CCGGUgCGu-AGGC- -5'
28880 5' -62.1 NC_006146.1 + 150675 0.67 0.609397
Target:  5'- gGGaGGGGUGGGgaGUGGCCAgGgGgaCGg -3'
miRNA:   3'- -CC-CCCCACCCg-UACCGGUgCgUagGC- -5'
28880 5' -62.1 NC_006146.1 + 110894 0.67 0.5997
Target:  5'- aGGcGGGGacgGGGCcgcguUGGCCuuGCAcUCCa -3'
miRNA:   3'- -CC-CCCCa--CCCGu----ACCGGugCGU-AGGc -5'
28880 5' -62.1 NC_006146.1 + 92233 0.67 0.5997
Target:  5'- uGGGGGGcGGGCccGGCC-UGUggCUGc -3'
miRNA:   3'- -CCCCCCaCCCGuaCCGGuGCGuaGGC- -5'
28880 5' -62.1 NC_006146.1 + 3073 0.68 0.581341
Target:  5'- aGGGGGaGcccgggaagacccggGGGCG-GGCCACGCGcgcCCGc -3'
miRNA:   3'- -CCCCC-Ca--------------CCCGUaCCGGUGCGUa--GGC- -5'
28880 5' -62.1 NC_006146.1 + 2141 0.68 0.581341
Target:  5'- aGGGGGaGcccgggaagacccggGGGCG-GGCCACGCGcgcCCGc -3'
miRNA:   3'- -CCCCC-Ca--------------CCCGUaCCGGUGCGUa--GGC- -5'
28880 5' -62.1 NC_006146.1 + 95743 0.66 0.648273
Target:  5'- uGGGGG-GGGCugguguUGGCCcCGguUuuGg -3'
miRNA:   3'- cCCCCCaCCCGu-----ACCGGuGCguAggC- -5'
28880 5' -62.1 NC_006146.1 + 141215 0.66 0.657981
Target:  5'- uGGGGGGaacUGGGCAgUGGaCACGgGgCUGa -3'
miRNA:   3'- -CCCCCC---ACCCGU-ACCgGUGCgUaGGC- -5'
28880 5' -62.1 NC_006146.1 + 144293 0.66 0.657981
Target:  5'- uGGGGGGaacUGGGCAgUGGaCACGgGgCUGa -3'
miRNA:   3'- -CCCCCC---ACCCGU-ACCgGUGCgUaGGC- -5'
28880 5' -62.1 NC_006146.1 + 137220 0.66 0.706089
Target:  5'- cGGGGaGGaagccGGGUGggGGCCugGgGUCCc -3'
miRNA:   3'- -CCCC-CCa----CCCGUa-CCGGugCgUAGGc -5'
28880 5' -62.1 NC_006146.1 + 19288 0.66 0.677332
Target:  5'- cGGGucucGGUGGaGCG-GGUCACGCG-CCGc -3'
miRNA:   3'- -CCCc---CCACC-CGUaCCGGUGCGUaGGC- -5'
28880 5' -62.1 NC_006146.1 + 128752 0.66 0.666702
Target:  5'- aGGGGGUGuccgaGGCcuucuucuggaguGUGGCCA-GCAgggCCGa -3'
miRNA:   3'- cCCCCCAC-----CCG-------------UACCGGUgCGUa--GGC- -5'
28880 5' -62.1 NC_006146.1 + 298 0.66 0.657981
Target:  5'- cGGGGGcGGGCccGGC-GCGCucgCCa -3'
miRNA:   3'- cCCCCCaCCCGuaCCGgUGCGua-GGc -5'
28880 5' -62.1 NC_006146.1 + 156605 0.66 0.657981
Target:  5'- uGGGGGGaacUGGGCAgUGGaCACGgGgCUGa -3'
miRNA:   3'- -CCCCCC---ACCCGU-ACCgGUGCgUaGGC- -5'
28880 5' -62.1 NC_006146.1 + 153527 0.66 0.657981
Target:  5'- uGGGGGGaacUGGGCAgUGGaCACGgGgCUGa -3'
miRNA:   3'- -CCCCCC---ACCCGU-ACCgGUGCgUaGGC- -5'
28880 5' -62.1 NC_006146.1 + 150449 0.66 0.657981
Target:  5'- uGGGGGGaacUGGGCAgUGGaCACGgGgCUGa -3'
miRNA:   3'- -CCCCCC---ACCCGU-ACCgGUGCgUaGGC- -5'
28880 5' -62.1 NC_006146.1 + 147371 0.66 0.657981
Target:  5'- uGGGGGGaacUGGGCAgUGGaCACGgGgCUGa -3'
miRNA:   3'- -CCCCCC---ACCCGU-ACCgGUGCgUaGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.