Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28881 | 3' | -48.1 | NC_006146.1 | + | 4929 | 0.66 | 0.997089 |
Target: 5'- gCUGUCGGGUgGCCGuGCuCugUGc -3' miRNA: 3'- -GAUAGUCCAgUGGC-CGcGugAU- -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 20616 | 0.66 | 0.99863 |
Target: 5'- --uUCAGGcUCACCGgGgGCACc- -3' miRNA: 3'- gauAGUCC-AGUGGC-CgCGUGau -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 27792 | 0.71 | 0.94996 |
Target: 5'- --cUCAGGUCACCGGCuccaggaaACUAa -3' miRNA: 3'- gauAGUCCAGUGGCCGcg------UGAU- -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 29898 | 1.03 | 0.026758 |
Target: 5'- gCUAUCAGGUCACCGGCGCACUAc -3' miRNA: 3'- -GAUAGUCCAGUGGCCGCGUGAU- -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 41695 | 0.72 | 0.917612 |
Target: 5'- -aAUCGGGU-GCUGGCGCGCa- -3' miRNA: 3'- gaUAGUCCAgUGGCCGCGUGau -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 42526 | 0.71 | 0.94996 |
Target: 5'- -gGUCAGGUUGauGGCGUACUGg -3' miRNA: 3'- gaUAGUCCAGUggCCGCGUGAU- -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 44763 | 0.66 | 0.998332 |
Target: 5'- uUGUCGGGgC-CCGGCGgGCg- -3' miRNA: 3'- gAUAGUCCaGuGGCCGCgUGau -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 61294 | 0.7 | 0.962387 |
Target: 5'- cCUGUCGcGuGUUugCGGCGCGCg- -3' miRNA: 3'- -GAUAGU-C-CAGugGCCGCGUGau -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 68187 | 0.68 | 0.988247 |
Target: 5'- -cGUCAGGaCGCgGGCGCAg-- -3' miRNA: 3'- gaUAGUCCaGUGgCCGCGUgau -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 68974 | 0.67 | 0.993377 |
Target: 5'- -gGUCAccgcccccgcGGcCACCGGCGCAUUu -3' miRNA: 3'- gaUAGU----------CCaGUGGCCGCGUGAu -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 75758 | 0.66 | 0.997089 |
Target: 5'- --cUCAGGUCGCCGG-GCu--- -3' miRNA: 3'- gauAGUCCAGUGGCCgCGugau -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 91286 | 0.74 | 0.87516 |
Target: 5'- cCUGUCcccGGGacgagcUCACCGGUGCGCUGu -3' miRNA: 3'- -GAUAG---UCC------AGUGGCCGCGUGAU- -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 98843 | 0.67 | 0.996534 |
Target: 5'- cCUAcCAGGUCACUuuuacaaaGGCGC-CUGa -3' miRNA: 3'- -GAUaGUCCAGUGG--------CCGCGuGAU- -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 117926 | 0.71 | 0.958512 |
Target: 5'- ---gCAGGUcCGCCuGCGCACUAc -3' miRNA: 3'- gauaGUCCA-GUGGcCGCGUGAU- -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 124988 | 0.72 | 0.929528 |
Target: 5'- cCUAcggCAcGGUCACCGGCcggGCGCUGa -3' miRNA: 3'- -GAUa--GU-CCAGUGGCCG---CGUGAU- -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 125005 | 0.66 | 0.99863 |
Target: 5'- --uUCAGGUaGCCGGCGUcCg- -3' miRNA: 3'- gauAGUCCAgUGGCCGCGuGau -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 133052 | 0.79 | 0.611385 |
Target: 5'- cCUAUCuGGUCGCCGGCcacuucugugGCACUGu -3' miRNA: 3'- -GAUAGuCCAGUGGCCG----------CGUGAU- -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 143814 | 0.66 | 0.998332 |
Target: 5'- -----cGGUCACCGGCuCACa- -3' miRNA: 3'- gauaguCCAGUGGCCGcGUGau -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 147066 | 0.67 | 0.996534 |
Target: 5'- ---cCAGGUC-CCGGCGUAg-- -3' miRNA: 3'- gauaGUCCAGuGGCCGCGUgau -5' |
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28881 | 3' | -48.1 | NC_006146.1 | + | 164296 | 0.67 | 0.995162 |
Target: 5'- uUAUgAGGUcCGCCGGgGcCACUGc -3' miRNA: 3'- gAUAgUCCA-GUGGCCgC-GUGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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