miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28881 3' -48.1 NC_006146.1 + 41695 0.72 0.917612
Target:  5'- -aAUCGGGU-GCUGGCGCGCa- -3'
miRNA:   3'- gaUAGUCCAgUGGCCGCGUGau -5'
28881 3' -48.1 NC_006146.1 + 168112 0.73 0.890402
Target:  5'- ---aCGGGagGCCGGCGCGCg- -3'
miRNA:   3'- gauaGUCCagUGGCCGCGUGau -5'
28881 3' -48.1 NC_006146.1 + 169044 0.73 0.890402
Target:  5'- ---aCGGGagGCCGGCGCGCg- -3'
miRNA:   3'- gauaGUCCagUGGCCGCGUGau -5'
28881 3' -48.1 NC_006146.1 + 169976 0.73 0.890402
Target:  5'- ---aCGGGagGCCGGCGCGCg- -3'
miRNA:   3'- gauaGUCCagUGGCCGCGUGau -5'
28881 3' -48.1 NC_006146.1 + 167180 0.73 0.890402
Target:  5'- ---aCGGGagGCCGGCGCGCg- -3'
miRNA:   3'- gauaGUCCagUGGCCGCGUGau -5'
28881 3' -48.1 NC_006146.1 + 91286 0.74 0.87516
Target:  5'- cCUGUCcccGGGacgagcUCACCGGUGCGCUGu -3'
miRNA:   3'- -GAUAG---UCC------AGUGGCCGCGUGAU- -5'
28881 3' -48.1 NC_006146.1 + 133052 0.79 0.611385
Target:  5'- cCUAUCuGGUCGCCGGCcacuucugugGCACUGu -3'
miRNA:   3'- -GAUAGuCCAGUGGCCG----------CGUGAU- -5'
28881 3' -48.1 NC_006146.1 + 29898 1.03 0.026758
Target:  5'- gCUAUCAGGUCACCGGCGCACUAc -3'
miRNA:   3'- -GAUAGUCCAGUGGCCGCGUGAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.