Results 61 - 80 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 127312 | 0.69 | 0.581958 |
Target: 5'- cGACCCGGCCUcccGCCCCGcuccccgGGAACgCUc -3' miRNA: 3'- -CUGGGUCGGGa--CGGGGCa------CUUUG-GAu -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 27246 | 0.69 | 0.571994 |
Target: 5'- cGCCCAucGCCUUGCCCUGcgcccGggGCCa- -3' miRNA: 3'- cUGGGU--CGGGACGGGGCa----CuuUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 19092 | 0.69 | 0.552195 |
Target: 5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3' miRNA: 3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 25248 | 0.69 | 0.552195 |
Target: 5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3' miRNA: 3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 4168 | 0.69 | 0.566035 |
Target: 5'- cGGCUCGGCcuCCUGCCCCGagacgggcucggcgGGAACCg- -3' miRNA: 3'- -CUGGGUCG--GGACGGGGCa-------------CUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 1534 | 0.69 | 0.538459 |
Target: 5'- cGGCgCCAGCCCUGCCCCcucucccccGCCa- -3' miRNA: 3'- -CUG-GGUCGGGACGGGGcacuu----UGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 2466 | 0.69 | 0.538459 |
Target: 5'- cGGCgCCAGCCCUGCCCCcucucccccGCCa- -3' miRNA: 3'- -CUG-GGUCGGGACGGGGcacuu----UGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 3398 | 0.69 | 0.538459 |
Target: 5'- cGGCgCCAGCCCUGCCCCcucucccccGCCa- -3' miRNA: 3'- -CUG-GGUCGGGACGGGGcacuu----UGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 117881 | 0.69 | 0.552195 |
Target: 5'- cGGCCgCGGCCa-GCCgCGUGAGGCCc- -3' miRNA: 3'- -CUGG-GUCGGgaCGGgGCACUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 59022 | 0.69 | 0.591958 |
Target: 5'- --aCCAGCaCUGCCCCGaGGGACCc- -3' miRNA: 3'- cugGGUCGgGACGGGGCaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 118924 | 0.69 | 0.591958 |
Target: 5'- cGCCCGGCCC-GCaugCCG-GAGACCUc -3' miRNA: 3'- cUGGGUCGGGaCGg--GGCaCUUUGGAu -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 28326 | 0.69 | 0.552195 |
Target: 5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3' miRNA: 3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 603 | 0.69 | 0.538459 |
Target: 5'- cGGCgCCAGCCCUGCCCCcucucccccGCCa- -3' miRNA: 3'- -CUG-GGUCGGGACGGGGcacuu----UGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 35633 | 0.7 | 0.532607 |
Target: 5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3' miRNA: 3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 35726 | 0.7 | 0.532607 |
Target: 5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3' miRNA: 3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 35447 | 0.7 | 0.532607 |
Target: 5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3' miRNA: 3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 35354 | 0.7 | 0.532607 |
Target: 5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3' miRNA: 3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 70018 | 0.7 | 0.484838 |
Target: 5'- aGACCCAGgCCgacaGgUCCGUGAGACCc- -3' miRNA: 3'- -CUGGGUCgGGa---CgGGGCACUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 109479 | 0.7 | 0.484838 |
Target: 5'- aGCCCGGCCgUGCCCgCGUu-GGCCa- -3' miRNA: 3'- cUGGGUCGGgACGGG-GCAcuUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 719 | 0.7 | 0.484838 |
Target: 5'- -cCCCGGCCCcGCCCuCG-GGAGCCc- -3' miRNA: 3'- cuGGGUCGGGaCGGG-GCaCUUUGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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