Results 121 - 126 of 126 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28883 | 3' | -59.6 | NC_006146.1 | + | 71349 | 0.66 | 0.741184 |
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Target: 5'- gGACCCcgauCUCUGCCCCG-GggGCUc- -3' miRNA: 3'- -CUGGGuc--GGGACGGGGCaCuuUGGau -5' |
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| 28883 | 3' | -59.6 | NC_006146.1 | + | 52129 | 0.66 | 0.750715 |
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Target: 5'- gGACaCCAGCUCggGCCCCaccagGUcGAAGCCg- -3' miRNA: 3'- -CUG-GGUCGGGa-CGGGG-----CA-CUUUGGau -5' |
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| 28883 | 3' | -59.6 | NC_006146.1 | + | 68033 | 0.66 | 0.754499 |
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Target: 5'- gGGCCCGGCCacgaccagguggcggCUGCCCUG-GcuGCCa- -3' miRNA: 3'- -CUGGGUCGG---------------GACGGGGCaCuuUGGau -5' |
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| 28883 | 3' | -59.6 | NC_006146.1 | + | 41241 | 0.66 | 0.760144 |
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Target: 5'- --aCCGGCCCUGCUCUGguacAGACCc- -3' miRNA: 3'- cugGGUCGGGACGGGGCac--UUUGGau -5' |
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| 28883 | 3' | -59.6 | NC_006146.1 | + | 58386 | 0.66 | 0.769464 |
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Target: 5'- uGACCCAgGCCCUccaccgGCCCC-UG-GACCg- -3' miRNA: 3'- -CUGGGU-CGGGA------CGGGGcACuUUGGau -5' |
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| 28883 | 3' | -59.6 | NC_006146.1 | + | 60067 | 0.66 | 0.769464 |
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Target: 5'- gGGCgCC-GCCUcGUCCCGUGGAGCUa- -3' miRNA: 3'- -CUG-GGuCGGGaCGGGGCACUUUGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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