Results 121 - 126 of 126 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28883 | 3' | -59.6 | NC_006146.1 | + | 33005 | 0.73 | 0.363698 |
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Target: 5'- -cCCCGGCCCUGUCCaCG-GGGACCc- -3' miRNA: 3'- cuGGGUCGGGACGGG-GCaCUUUGGau -5' |
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| 28883 | 3' | -59.6 | NC_006146.1 | + | 161820 | 0.73 | 0.362911 |
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Target: 5'- aGACCCGGCUUUccuuuugggccacGCCCCGUGGgaGACCg- -3' miRNA: 3'- -CUGGGUCGGGA-------------CGGGGCACU--UUGGau -5' |
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| 28883 | 3' | -59.6 | NC_006146.1 | + | 3924 | 0.73 | 0.333147 |
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Target: 5'- cGCCCAGCCaCUGCCCCGU----CCUc -3' miRNA: 3'- cUGGGUCGG-GACGGGGCAcuuuGGAu -5' |
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| 28883 | 3' | -59.6 | NC_006146.1 | + | 111457 | 0.74 | 0.311495 |
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Target: 5'- cGGCCCAGUCgUGCCa-GUGAAACCa- -3' miRNA: 3'- -CUGGGUCGGgACGGggCACUUUGGau -5' |
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| 28883 | 3' | -59.6 | NC_006146.1 | + | 139287 | 0.76 | 0.241317 |
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Target: 5'- gGGCCCGGCCUUGagcccaucCCCCGUGGugucAGCCUGu -3' miRNA: 3'- -CUGGGUCGGGAC--------GGGGCACU----UUGGAU- -5' |
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| 28883 | 3' | -59.6 | NC_006146.1 | + | 29544 | 1.06 | 0.001997 |
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Target: 5'- uGACCCAGCCCUGCCCCGUGAAACCUAa -3' miRNA: 3'- -CUGGGUCGGGACGGGGCACUUUGGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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