miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 3' -59.6 NC_006146.1 + 28326 0.69 0.552195
Target:  5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3'
miRNA:   3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 28580 0.68 0.622099
Target:  5'- uGCCCGGCCUcGCUCCG-GgcGCCUc -3'
miRNA:   3'- cUGGGUCGGGaCGGGGCaCuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 28844 0.68 0.601986
Target:  5'- gGACCCcggcAGCCCgggugGCCCCa-GAGGCCa- -3'
miRNA:   3'- -CUGGG----UCGGGa----CGGGGcaCUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 29544 1.06 0.001997
Target:  5'- uGACCCAGCCCUGCCCCGUGAAACCUAa -3'
miRNA:   3'- -CUGGGUCGGGACGGGGCACUUUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 29668 0.72 0.387854
Target:  5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3'
miRNA:   3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5'
28883 3' -59.6 NC_006146.1 + 33005 0.73 0.363698
Target:  5'- -cCCCGGCCCUGUCCaCG-GGGACCc- -3'
miRNA:   3'- cuGGGUCGGGACGGG-GCaCUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 33377 0.66 0.730594
Target:  5'- cGCCgGGCCgCUGCCCCGcuccgggUGGGggguggcccGCCUGg -3'
miRNA:   3'- cUGGgUCGG-GACGGGGC-------ACUU---------UGGAU- -5'
28883 3' -59.6 NC_006146.1 + 33403 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 33496 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 33589 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 33682 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 33775 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 33868 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 33960 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34053 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34146 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34239 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34332 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34425 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34518 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.