Results 121 - 126 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 158443 | 0.66 | 0.731561 |
Target: 5'- gGGCCCgagGGCCUgaaagGCCCCGgc--GCCUGg -3' miRNA: 3'- -CUGGG---UCGGGa----CGGGGCacuuUGGAU- -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 161002 | 0.66 | 0.731561 |
Target: 5'- uGACCuCAGCCCcaUGCCgUGUGcaugcguACCUGa -3' miRNA: 3'- -CUGG-GUCGGG--ACGGgGCACuu-----UGGAU- -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 161820 | 0.73 | 0.362911 |
Target: 5'- aGACCCGGCUUUccuuuugggccacGCCCCGUGGgaGACCg- -3' miRNA: 3'- -CUGGGUCGGGA-------------CGGGGCACU--UUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 161887 | 0.72 | 0.421658 |
Target: 5'- aGACCCGGCuucCCUuuugggcaacGCCCCGUGGgaGACCg- -3' miRNA: 3'- -CUGGGUCG---GGA----------CGGGGCACU--UUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 161954 | 0.72 | 0.421658 |
Target: 5'- aGACCCGGCuucCCUuucgggcaacGCCCCGUGGgaGACCg- -3' miRNA: 3'- -CUGGGUCG---GGA----------CGGGGCACU--UUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 169072 | 0.67 | 0.662353 |
Target: 5'- cACCCGGCUgUGCCCCGccauGAUCUc -3' miRNA: 3'- cUGGGUCGGgACGGGGCacu-UUGGAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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