miRNA display CGI


Results 41 - 60 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 3' -59.6 NC_006146.1 + 63115 0.69 0.562071
Target:  5'- aGACCCuGCgCaggUGCCCC-UGGGACCUGc -3'
miRNA:   3'- -CUGGGuCGgG---ACGGGGcACUUUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 60067 0.66 0.769464
Target:  5'- gGGCgCC-GCCUcGUCCCGUGGAGCUa- -3'
miRNA:   3'- -CUG-GGuCGGGaCGGGGCACUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 59022 0.69 0.591958
Target:  5'- --aCCAGCaCUGCCCCGaGGGACCc- -3'
miRNA:   3'- cugGGUCGgGACGGGGCaCUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 58386 0.66 0.769464
Target:  5'- uGACCCAgGCCCUccaccgGCCCC-UG-GACCg- -3'
miRNA:   3'- -CUGGGU-CGGGA------CGGGGcACuUUGGau -5'
28883 3' -59.6 NC_006146.1 + 53366 0.7 0.503716
Target:  5'- aAUgCGGCCCagGCCCCGagggagaggcgUGAGACCUAu -3'
miRNA:   3'- cUGgGUCGGGa-CGGGGC-----------ACUUUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 53182 0.66 0.731561
Target:  5'- aGGCUCGGCCUcgGCCCCGgccuuggGggGCg-- -3'
miRNA:   3'- -CUGGGUCGGGa-CGGGGCa------CuuUGgau -5'
28883 3' -59.6 NC_006146.1 + 52129 0.66 0.750715
Target:  5'- gGACaCCAGCUCggGCCCCaccagGUcGAAGCCg- -3'
miRNA:   3'- -CUG-GGUCGGGa-CGGGG-----CA-CUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 46974 0.67 0.672378
Target:  5'- cGGCCCGGCCgccgccaggaaUUGCgCCCGUcGGACCg- -3'
miRNA:   3'- -CUGGGUCGG-----------GACG-GGGCAcUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 45285 0.67 0.671376
Target:  5'- --aCCAGCCCaUGCCCCacccucgGUGGAaaGCCg- -3'
miRNA:   3'- cugGGUCGGG-ACGGGG-------CACUU--UGGau -5'
28883 3' -59.6 NC_006146.1 + 43204 0.68 0.601986
Target:  5'- cGGCCCAGUCCUGCUacgaggaguaCGUGcagcGGACCUu -3'
miRNA:   3'- -CUGGGUCGGGACGGg---------GCAC----UUUGGAu -5'
28883 3' -59.6 NC_006146.1 + 41867 0.72 0.396137
Target:  5'- gGGCCCAGCUcgggCUGCgCCGUGccccGGACCUGa -3'
miRNA:   3'- -CUGGGUCGG----GACGgGGCAC----UUUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 41241 0.66 0.760144
Target:  5'- --aCCGGCCCUGCUCUGguacAGACCc- -3'
miRNA:   3'- cugGGUCGGGACGGGGCac--UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35726 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35633 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35540 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35447 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35354 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35261 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35168 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35075 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.