Results 81 - 100 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 33005 | 0.73 | 0.363698 |
Target: 5'- -cCCCGGCCCUGUCCaCG-GGGACCc- -3' miRNA: 3'- cuGGGUCGGGACGGG-GCaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 29668 | 0.72 | 0.387854 |
Target: 5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3' miRNA: 3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 29544 | 1.06 | 0.001997 |
Target: 5'- uGACCCAGCCCUGCCCCGUGAAACCUAa -3' miRNA: 3'- -CUGGGUCGGGACGGGGCACUUUGGAU- -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 28844 | 0.68 | 0.601986 |
Target: 5'- gGACCCcggcAGCCCgggugGCCCCa-GAGGCCa- -3' miRNA: 3'- -CUGGG----UCGGGa----CGGGGcaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 28580 | 0.68 | 0.622099 |
Target: 5'- uGCCCGGCCUcGCUCCG-GgcGCCUc -3' miRNA: 3'- cUGGGUCGGGaCGGGGCaCuuUGGAu -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 28326 | 0.69 | 0.552195 |
Target: 5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3' miRNA: 3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 27246 | 0.69 | 0.571994 |
Target: 5'- cGCCCAucGCCUUGCCCUGcgcccGggGCCa- -3' miRNA: 3'- cUGGGU--CGGGACGGGGCa----CuuUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 26590 | 0.72 | 0.387854 |
Target: 5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3' miRNA: 3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 25766 | 0.68 | 0.601986 |
Target: 5'- gGACCCcggcAGCCCgggugGCCCCa-GAGGCCa- -3' miRNA: 3'- -CUGGG----UCGGGa----CGGGGcaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 25502 | 0.68 | 0.622099 |
Target: 5'- uGCCCGGCCUcGCUCCG-GgcGCCUc -3' miRNA: 3'- cUGGGUCGGGaCGGGGCaCuuUGGAu -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 25248 | 0.69 | 0.552195 |
Target: 5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3' miRNA: 3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 24168 | 0.69 | 0.571994 |
Target: 5'- cGCCCAucGCCUUGCCCUGcgcccGggGCCa- -3' miRNA: 3'- cUGGGU--CGGGACGGGGCa----CuuUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 23512 | 0.72 | 0.387854 |
Target: 5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3' miRNA: 3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 22688 | 0.68 | 0.601986 |
Target: 5'- gGACCCcggcAGCCCgggugGCCCCa-GAGGCCa- -3' miRNA: 3'- -CUGGG----UCGGGa----CGGGGcaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 22424 | 0.68 | 0.622099 |
Target: 5'- uGCCCGGCCUcGCUCCG-GgcGCCUc -3' miRNA: 3'- cUGGGUCGGGaCGGGGCaCuuUGGAu -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 22170 | 0.69 | 0.552195 |
Target: 5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3' miRNA: 3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 21090 | 0.69 | 0.571994 |
Target: 5'- cGCCCAucGCCUUGCCCUGcgcccGggGCCa- -3' miRNA: 3'- cUGGGU--CGGGACGGGGCa----CuuUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 20434 | 0.72 | 0.387854 |
Target: 5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3' miRNA: 3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 19610 | 0.68 | 0.601986 |
Target: 5'- gGACCCcggcAGCCCgggugGCCCCa-GAGGCCa- -3' miRNA: 3'- -CUGGG----UCGGGa----CGGGGcaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 19346 | 0.68 | 0.622099 |
Target: 5'- uGCCCGGCCUcGCUCCG-GgcGCCUc -3' miRNA: 3'- cUGGGUCGGGaCGGGGCaCuuUGGAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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