miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 3' -59.6 NC_006146.1 + 27246 0.69 0.571994
Target:  5'- cGCCCAucGCCUUGCCCUGcgcccGggGCCa- -3'
miRNA:   3'- cUGGGU--CGGGACGGGGCa----CuuUGGau -5'
28883 3' -59.6 NC_006146.1 + 35726 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35633 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 161002 0.66 0.731561
Target:  5'- uGACCuCAGCCCcaUGCCgUGUGcaugcguACCUGa -3'
miRNA:   3'- -CUGG-GUCGGG--ACGGgGCACuu-----UGGAU- -5'
28883 3' -59.6 NC_006146.1 + 35447 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 109479 0.7 0.484838
Target:  5'- aGCCCGGCCgUGCCCgCGUu-GGCCa- -3'
miRNA:   3'- cUGGGUCGGgACGGG-GCAcuUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35354 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35540 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 17598 0.67 0.692323
Target:  5'- cGACCUGGCCCggGCCUgGU---GCCUGg -3'
miRNA:   3'- -CUGGGUCGGGa-CGGGgCAcuuUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 33403 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 53366 0.7 0.503716
Target:  5'- aAUgCGGCCCagGCCCCGagggagaggcgUGAGACCUAu -3'
miRNA:   3'- cUGgGUCGGGa-CGGGGC-----------ACUUUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 3514 0.7 0.484838
Target:  5'- -cCCCGGCCCcGCCCuCG-GGAGCCc- -3'
miRNA:   3'- cuGGGUCGGGaCGGG-GCaCUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 2582 0.7 0.484838
Target:  5'- -cCCCGGCCCcGCCCuCG-GGAGCCc- -3'
miRNA:   3'- cuGGGUCGGGaCGGG-GCaCUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 1650 0.7 0.484838
Target:  5'- -cCCCGGCCCcGCCCuCG-GGAGCCc- -3'
miRNA:   3'- cuGGGUCGGGaCGGG-GCaCUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 719 0.7 0.484838
Target:  5'- -cCCCGGCCCcGCCCuCG-GGAGCCc- -3'
miRNA:   3'- cuGGGUCGGGaCGGG-GCaCUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 70018 0.7 0.484838
Target:  5'- aGACCCAGgCCgacaGgUCCGUGAGACCc- -3'
miRNA:   3'- -CUGGGUCgGGa---CgGGGCACUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 104639 0.71 0.448144
Target:  5'- gGACCCgcgAGaCCCUGCCCCccaccGUGGAgaauGCCUGc -3'
miRNA:   3'- -CUGGG---UC-GGGACGGGG-----CACUU----UGGAU- -5'
28883 3' -59.6 NC_006146.1 + 33005 0.73 0.363698
Target:  5'- -cCCCGGCCCUGUCCaCG-GGGACCc- -3'
miRNA:   3'- cuGGGUCGGGACGGG-GCaCUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 3924 0.73 0.333147
Target:  5'- cGCCCAGCCaCUGCCCCGU----CCUc -3'
miRNA:   3'- cUGGGUCGG-GACGGGGCAcuuuGGAu -5'
28883 3' -59.6 NC_006146.1 + 16012 0.67 0.682371
Target:  5'- aGCCCgggcgaGGCCCUGCCCCccGAcgggcucuACCUGa -3'
miRNA:   3'- cUGGG------UCGGGACGGGGcaCUu-------UGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.