miRNA display CGI


Results 101 - 120 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 3' -59.6 NC_006146.1 + 104639 0.71 0.448144
Target:  5'- gGACCCgcgAGaCCCUGCCCCccaccGUGGAgaauGCCUGc -3'
miRNA:   3'- -CUGGG---UC-GGGACGGGG-----CACUU----UGGAU- -5'
28883 3' -59.6 NC_006146.1 + 70018 0.7 0.484838
Target:  5'- aGACCCAGgCCgacaGgUCCGUGAGACCc- -3'
miRNA:   3'- -CUGGGUCgGGa---CgGGGCACUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 109479 0.7 0.484838
Target:  5'- aGCCCGGCCgUGCCCgCGUu-GGCCa- -3'
miRNA:   3'- cUGGGUCGGgACGGG-GCAcuUUGGau -5'
28883 3' -59.6 NC_006146.1 + 719 0.7 0.484838
Target:  5'- -cCCCGGCCCcGCCCuCG-GGAGCCc- -3'
miRNA:   3'- cuGGGUCGGGaCGGG-GCaCUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 33775 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 33868 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35168 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35075 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34982 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34890 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34797 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34704 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34611 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34518 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34425 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34332 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34239 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34146 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 33960 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34053 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.