Results 61 - 80 of 160 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 24187 | 0.67 | 0.551187 |
Target: 5'- gGACAGGGCagaGGaGGGCUgGGCCugcgAGGu -3' miRNA: 3'- -CUGUCCUGgggCC-CCCGAgUCGG----UCC- -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 154503 | 0.67 | 0.551187 |
Target: 5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3' miRNA: 3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 154234 | 0.67 | 0.56065 |
Target: 5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3' miRNA: 3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 157312 | 0.67 | 0.56065 |
Target: 5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3' miRNA: 3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 46041 | 0.67 | 0.532412 |
Target: 5'- cGACGGGGCCCUccaGGGGacgCAGCgAGu -3' miRNA: 3'- -CUGUCCUGGGGc--CCCCga-GUCGgUCc -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 94943 | 0.67 | 0.56065 |
Target: 5'- gGACGuGGCCgCUgcgguagagGGGGGUgugCAGCCAGGc -3' miRNA: 3'- -CUGUcCUGG-GG---------CCCCCGa--GUCGGUCC- -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 62944 | 0.67 | 0.56065 |
Target: 5'- -cCAGGGCCCUGGaGGuCUCGGCUg-- -3' miRNA: 3'- cuGUCCUGGGGCCcCC-GAGUCGGucc -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 25731 | 0.67 | 0.570158 |
Target: 5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3' miRNA: 3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 22653 | 0.67 | 0.570158 |
Target: 5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3' miRNA: 3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 19575 | 0.67 | 0.570158 |
Target: 5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3' miRNA: 3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 16497 | 0.67 | 0.570158 |
Target: 5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3' miRNA: 3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 13419 | 0.67 | 0.570158 |
Target: 5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3' miRNA: 3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 169995 | 0.67 | 0.56065 |
Target: 5'- -cCGGGGuCCCgGGGGGCggcgcgCGGCCu-- -3' miRNA: 3'- cuGUCCU-GGGgCCCCCGa-----GUCGGucc -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 32930 | 0.67 | 0.570158 |
Target: 5'- cGCcGGcCCCCGGGaGGCcCGGCCGc- -3' miRNA: 3'- cUGuCCuGGGGCCC-CCGaGUCGGUcc -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 28809 | 0.67 | 0.570158 |
Target: 5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3' miRNA: 3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 33195 | 0.67 | 0.541772 |
Target: 5'- -cCGGGcacCCCCGGGGGga-GGCCGGa -3' miRNA: 3'- cuGUCCu--GGGGCCCCCgagUCGGUCc -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 135610 | 0.68 | 0.513871 |
Target: 5'- aGACAGGcaACCCC-GGGGCUgA-UCAGGu -3' miRNA: 3'- -CUGUCC--UGGGGcCCCCGAgUcGGUCC- -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 55282 | 0.68 | 0.4956 |
Target: 5'- --uGGGGCUCgCGGuGGGCagCAGCCGGa -3' miRNA: 3'- cugUCCUGGG-GCC-CCCGa-GUCGGUCc -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 169475 | 0.68 | 0.477629 |
Target: 5'- --gGGGGCCUCGGGGGCggAGggGGGg -3' miRNA: 3'- cugUCCUGGGGCCCCCGagUCggUCC- -5' |
|||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 116252 | 0.68 | 0.513871 |
Target: 5'- cGACGGGGCCCCuccaaugcccGGGGaGCcacCGGaCCAGa -3' miRNA: 3'- -CUGUCCUGGGG----------CCCC-CGa--GUC-GGUCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home